Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB/nlmE   Type   Regulator
Locus tag   EL130_RS03200 Genome accession   NZ_LR134320
Coordinates   608723..609625 (+) Length   300 a.a.
NCBI ID   WP_002263524.1    Uniprot ID   A0AAX1K0S8
Organism   Streptococcus mutans strain NCTC10832     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 603723..614625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL130_RS03175 - 603806..603967 (+) 162 WP_162470319.1 hypothetical protein -
  EL130_RS03180 (NCTC10832_00600) - 604439..604648 (+) 210 WP_002263944.1 hypothetical protein -
  EL130_RS03185 - 604886..605164 (+) 279 WP_002310898.1 hypothetical protein -
  EL130_RS03195 (NCTC10832_00602) comA/nlmT 606427..608709 (+) 2283 WP_002266017.1 peptide cleavage/export ABC transporter Regulator
  EL130_RS03200 (NCTC10832_00603) comB/nlmE 608723..609625 (+) 903 WP_002263524.1 HlyD family efflux transporter periplasmic adaptor subunit Regulator
  EL130_RS03205 (NCTC10832_00604) - 609998..611662 (+) 1665 WP_002283744.1 BglG family transcription antiterminator -
  EL130_RS03210 (NCTC10832_00605) ulaG 612239..613330 (+) 1092 WP_002263526.1 L-ascorbate 6-phosphate lactonase -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34116.49 Da        Isoelectric Point: 10.4213

>NTDB_id=1121416 EL130_RS03200 WP_002263524.1 608723..609625(+) (comB/nlmE) [Streptococcus mutans strain NCTC10832]
MDPKFLQSAEFYRRRYHNFATLLIVPLVCLIIFLVIFLCFAKKEITVISTGEVAPTKVVDVIQSYSDSSIIKNNLDNNAA
VEKGDVLIEYSENASPNRQTEQKNIIKERQKREEKEKKKHQKSKKKKKSKSKKASKDKKKKSKDKESSSDDENETKKVSI
FASEDGIIHTNPKYDGANIIPKQTEIAQIYPDIQKTRKVLITYYASSDDVVSMKKGQTARLSLEKKGNDKVVIEGKINNV
ASSATTTKKGNLFKVTAKVKVSKKNSKLIKYGMTGKTVTVIDKKTYFDYFKDKLLHKMDN

Nucleotide


Download         Length: 903 bp        

>NTDB_id=1121416 EL130_RS03200 WP_002263524.1 608723..609625(+) (comB/nlmE) [Streptococcus mutans strain NCTC10832]
ATGGATCCTAAATTTTTACAAAGTGCAGAATTTTATAGGAGACGCTATCATAATTTTGCGACACTATTAATTGTTCCTTT
GGTCTGCTTGATTATCTTCTTGGTCATATTCCTTTGTTTTGCTAAAAAAGAAATTACAGTGATTTCTACTGGTGAAGTTG
CACCAACAAAGGTTGTAGATGTTATCCAATCTTACAGTGACAGTTCAATCATTAAAAATAATTTAGATAATAATGCAGCT
GTTGAGAAGGGAGACGTTTTAATTGAATATTCAGAAAATGCCAGTCCAAACCGTCAGACTGAACAAAAGAATATTATAAA
AGAAAGACAAAAACGAGAAGAGAAGGAAAAGAAAAAACACCAAAAGAGCAAGAAAAAGAAGAAGTCTAAGAGCAAGAAAG
CTTCCAAAGATAAGAAAAAGAAATCGAAAGACAAGGAAAGCAGCTCTGACGATGAAAATGAGACAAAAAAGGTTTCGATT
TTTGCTTCAGAAGATGGTATTATTCATACCAATCCCAAATATGATGGTGCCAATATTATTCCGAAGCAAACCGAGATTGC
TCAAATCTATCCTGATATTCAAAAAACAAGAAAAGTGTTAATCACCTATTATGCTTCTTCTGATGATGTTGTTTCTATGA
AAAAGGGGCAAACCGCTCGTCTTTCCTTGGAAAAAAAGGGAAATGACAAGGTTGTTATTGAAGGAAAAATTAACAATGTC
GCTTCATCAGCAACTACTACTAAAAAAGGAAATCTCTTTAAGGTTACTGCCAAAGTAAAGGTTTCTAAGAAAAATAGCAA
ACTCATCAAGTATGGTATGACAGGCAAGACAGTCACTGTCATTGATAAAAAGACTTATTTTGATTATTTCAAAGATAAAT
TACTGCATAAAATGGATAATTAG

Domains

Predicted by InterproScan.

HlyD family secretion protein (HlyD_3)

(160-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB/nlmE Streptococcus mutans UA159

100

100

1

Multiple sequence alignment