Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   EL130_RS02580 Genome accession   NZ_LR134320
Coordinates   498140..498853 (-) Length   237 a.a.
NCBI ID   WP_002278485.1    Uniprot ID   -
Organism   Streptococcus mutans strain NCTC10832     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 493140..503853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL130_RS02570 (NCTC10832_00479) dtd 494313..494759 (+) 447 WP_002266260.1 D-aminoacyl-tRNA deacylase -
  EL130_RS02575 (NCTC10832_00480) dexA 495242..497794 (+) 2553 WP_126475562.1 dextranase DexA -
  EL130_RS10150 - 497876..498013 (-) 138 WP_002279987.1 hypothetical protein -
  EL130_RS02580 (NCTC10832_00481) treR 498140..498853 (-) 714 WP_002278485.1 trehalose operon repressor Regulator
  EL130_RS02585 (NCTC10832_00482) treP 499027..500994 (+) 1968 WP_002283507.1 PTS system trehalose-specific EIIBC component -
  EL130_RS02590 (NCTC10832_00483) treC 501020..502648 (+) 1629 WP_002351744.1 alpha,alpha-phosphotrehalase -
  EL130_RS10280 - 502734..503078 (+) 345 Protein_457 lipase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27814.17 Da        Isoelectric Point: 9.8454

>NTDB_id=1121410 EL130_RS02580 WP_002278485.1 498140..498853(-) (treR) [Streptococcus mutans strain NCTC10832]
MKKYEIIFKKLEEDILKGHYQMGDYLPPEMELSQTYASSRDTVRKALQLLTKAGFIKTVQGRGSQIIKRERINFPVSQLT
SYQELVKQLQMNVKTNVIAIDKLIIDEKLTKLTGFENKGLVWRITRQRVIDGVASILDTDYLDKALIPHMTREIAERSIY
DYLENQLKLDIAYAQKIITIDQVSQKDKILLDLDSENHVVSVKSKVYLSNQQQFQFTESRHKLEKFRFVDFARRHRD

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1121410 EL130_RS02580 WP_002278485.1 498140..498853(-) (treR) [Streptococcus mutans strain NCTC10832]
ATGAAAAAATATGAAATTATTTTTAAAAAACTAGAAGAAGATATTCTCAAAGGACACTATCAAATGGGTGACTATCTTCC
CCCTGAAATGGAACTTAGCCAGACCTATGCTAGCAGCCGAGATACTGTTAGAAAGGCTTTACAGCTCTTGACTAAGGCAG
GTTTTATTAAAACAGTACAGGGAAGAGGATCCCAAATTATCAAGCGTGAGCGCATTAACTTTCCTGTTTCTCAACTAACC
AGCTATCAAGAATTGGTTAAACAATTGCAGATGAATGTCAAGACAAATGTTATTGCTATTGATAAACTGATTATTGATGA
GAAACTCACCAAACTAACCGGTTTTGAAAATAAAGGTCTTGTCTGGCGCATCACAAGACAGCGCGTAATAGACGGCGTTG
CTTCCATTTTAGATACGGATTATTTGGATAAAGCATTGATTCCTCATATGACCAGAGAAATCGCTGAACGTTCTATCTAT
GATTATCTTGAAAATCAACTTAAGCTGGACATTGCCTATGCTCAAAAGATTATTACCATAGATCAAGTATCGCAAAAAGA
TAAAATTTTGCTTGATTTGGATTCTGAAAATCATGTCGTTTCGGTTAAATCTAAAGTTTATCTCAGTAATCAGCAGCAAT
TTCAATTCACTGAAAGCCGGCACAAACTGGAAAAGTTCCGTTTTGTTGACTTTGCCAGACGGCATCGTGATTAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(90-227)

Bacterial regulatory proteins, gntR family (GntR)

(4-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

99.156

100

0.992

Multiple sequence alignment