Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EL136_RS08165 Genome accession   NZ_LR134317
Coordinates   1718587..1719948 (-) Length   453 a.a.
NCBI ID   WP_154804178.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC6180     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1713587..1724948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL136_RS08145 (NCTC6180_01669) gltX 1714218..1715663 (-) 1446 WP_154804176.1 glutamate--tRNA ligase -
  EL136_RS08150 (NCTC6180_01670) - 1716417..1717130 (-) 714 WP_037580456.1 TIGR00266 family protein -
  EL136_RS08155 (NCTC6180_01671) - 1717258..1717764 (-) 507 WP_012678595.1 beta-class carbonic anhydrase -
  EL136_RS08160 (NCTC6180_01672) - 1718148..1718426 (+) 279 WP_151374905.1 hypothetical protein -
  EL136_RS08165 (NCTC6180_01673) radA 1718587..1719948 (-) 1362 WP_154804178.1 DNA repair protein RadA Machinery gene
  EL136_RS08170 (NCTC6180_01674) - 1720014..1720460 (-) 447 WP_154804179.1 dUTP diphosphatase -
  EL136_RS08175 (NCTC6180_01675) - 1720641..1721408 (-) 768 WP_154804180.1 epoxyqueuosine reductase QueH -
  EL136_RS08180 (NCTC6180_01676) - 1721559..1723355 (-) 1797 WP_154804182.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49342.80 Da        Isoelectric Point: 7.0274

>NTDB_id=1121286 EL136_RS08165 WP_154804178.1 1718587..1719948(-) (radA) [Streptococcus equi subsp. zooepidemicus strain NCTC6180]
MAKKKARFICGECGYQSPKYLGRCPNCSAWSSFVEEAEVKDVKNARISLTGEKSKPIKLKHVNGVRYQRIQTEMNEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLADKGTVLYVSGEESAEQIKMRSDRLGQIDNDFYLYAETNMQAIRAEIE
AIQPDFLIIDSIQTIMSPDISGVQGSVSQVREVTAELLQLAKSNHIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFDMQSGGLVEVLNPSQVFLEERLDGATGSAVVVTMEGSRPILAEVQALVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKLYAPKSSLQGIDLPKGIEVVGVTTVGEVLKAVFT

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1121286 EL136_RS08165 WP_154804178.1 1718587..1719948(-) (radA) [Streptococcus equi subsp. zooepidemicus strain NCTC6180]
ATAGCTAAGAAAAAGGCAAGGTTTATCTGTGGAGAATGTGGCTATCAGTCACCCAAATATCTGGGGCGGTGCCCTAATTG
CTCTGCCTGGTCTTCTTTTGTAGAGGAGGCTGAGGTCAAGGACGTCAAAAATGCCCGTATTAGCCTGACTGGAGAAAAAA
GTAAGCCCATCAAGCTAAAGCATGTCAATGGCGTTCGCTACCAGCGTATCCAGACTGAGATGAATGAGTTCAATCGTGTG
CTGGGCGGAGGTGTTGTGCCTGGGAGCTTGGTTTTGATTGGTGGTGATCCTGGTATTGGTAAGTCAACATTGCTTTTGCA
GGTATCTATCCAGCTTGCAGATAAGGGAACCGTTTTATATGTCTCTGGAGAGGAATCGGCAGAGCAGATCAAGATGCGCA
GTGACCGCTTGGGACAGATCGACAATGACTTTTACCTCTATGCAGAGACCAATATGCAGGCAATTCGAGCAGAGATTGAA
GCCATTCAGCCGGATTTTTTGATTATTGACTCCATTCAGACCATTATGAGTCCTGATATTTCTGGTGTTCAAGGCTCGGT
TAGTCAGGTGAGAGAGGTCACTGCCGAGCTGCTCCAGCTAGCTAAGTCTAATCATATTGCAACCTTTATTGTAGGACATG
TCACCAAGGAGGGCACCCTAGCAGGGCCTCGTATGCTGGAGCATATGGTTGATACGGTCCTTTATTTTGAGGGCGAGAGG
CATCATACCTTTCGTATCTTGCGAGCGGTTAAAAATCGTTTTGGCTCAACCAATGAGATTGGTATTTTTGACATGCAATC
AGGTGGGCTAGTGGAGGTTCTCAATCCCAGTCAGGTGTTCTTAGAGGAACGATTAGATGGGGCAACAGGCTCTGCTGTGG
TTGTCACCATGGAGGGGAGCAGACCGATTTTGGCAGAGGTGCAGGCCTTAGTCACACCTACTGTTTTTGGTAATGCTAGA
CGAACGACGACTGGGTTGGACTTTAATCGCGTCAGTCTGATTATGGCTGTTTTGGAAAAGCGCTGCGGGCTTTTATTACA
AAATCAAGATGCCTACCTCAAATCAGCAGGAGGTGTGAAGCTAGATGAGCCTGCTATTGATTTGGCAGTTGCTGTGGCTA
TTGCTTCTAGCTACAAGGAAAAACCAACCAACCCTCAGGAGGCCTTCTTAGGAGAGATTGGCTTGACGGGCGAGATTCGG
CGGGTCACTCGTATTGAGCAGCGGATCAATGAGGCTGCAAAGCTTGGCTTTACCAAGCTTTACGCTCCTAAAAGCTCATT
GCAGGGCATTGATCTGCCAAAAGGGATTGAGGTTGTTGGTGTGACGACAGTAGGAGAGGTCTTAAAGGCTGTCTTTACTT
AG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(60-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

84.956

99.779

0.848
  radA Streptococcus pneumoniae D39

84.956

99.779

0.848
  radA Streptococcus pneumoniae R6

84.956

99.779

0.848
  radA Streptococcus pneumoniae TIGR4

84.956

99.779

0.848
  radA Streptococcus mitis NCTC 12261

84.513

99.779

0.843
  radA Streptococcus mitis SK321

84.513

99.779

0.843
  radA Bacillus subtilis subsp. subtilis str. 168

61.589

100

0.616

Multiple sequence alignment