Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   EL136_RS07630 Genome accession   NZ_LR134317
Coordinates   1608863..1609798 (-) Length   311 a.a.
NCBI ID   WP_021320349.1    Uniprot ID   A0A922NTU6
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC6180     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1603863..1614798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL136_RS07615 (NCTC6180_01561) - 1604311..1606032 (+) 1722 WP_154804141.1 IS1634-like element ISSeq4 family transposase -
  EL136_RS07620 (NCTC6180_01562) - 1606300..1606530 (+) 231 WP_154804142.1 DNA-dependent RNA polymerase subunit epsilon -
  EL136_RS07625 (NCTC6180_01563) rnjA 1606532..1608214 (+) 1683 WP_154804143.1 ribonuclease J1 -
  EL136_RS07630 (NCTC6180_01564) amiF 1608863..1609798 (-) 936 WP_021320349.1 ABC transporter ATP-binding protein Regulator
  EL136_RS07635 (NCTC6180_01565) oppD 1609798..1610844 (-) 1047 WP_154804144.1 ABC transporter ATP-binding protein Regulator
  EL136_RS07640 (NCTC6180_01566) - 1610857..1611888 (-) 1032 WP_021320347.1 ABC transporter permease -
  EL136_RS07645 (NCTC6180_01567) - 1611898..1612812 (-) 915 WP_012514937.1 ABC transporter permease -
  EL136_RS07650 (NCTC6180_01568) - 1612979..1614637 (-) 1659 WP_037580359.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 35013.13 Da        Isoelectric Point: 8.3807

>NTDB_id=1121284 EL136_RS07630 WP_021320349.1 1608863..1609798(-) (amiF) [Streptococcus equi subsp. zooepidemicus strain NCTC6180]
MTEARKKLIEVKNVSLTFNKGKKNEVKAIDRLSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDISDGEIIFNGENVSQL
KGKKLHSFRKHAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTASKAEREARVQELLKLVGLNQDHLTRYPHEFSGGQRQ
RIGIARALAVKPTFIIADEPISALDVSIQAQVVSLMQQLQKKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDE
VYNHPIHPYTKSLISAIPEPDPEKERKRIAEVYDPSQELDGQERQMHEITPGHFVLATQAEADQYRAERGL

Nucleotide


Download         Length: 936 bp        

>NTDB_id=1121284 EL136_RS07630 WP_021320349.1 1608863..1609798(-) (amiF) [Streptococcus equi subsp. zooepidemicus strain NCTC6180]
ATGACAGAAGCTCGTAAAAAATTAATCGAAGTAAAGAATGTTTCCTTAACCTTTAACAAGGGGAAGAAAAACGAGGTTAA
GGCTATTGATCGCCTTAGCTTTGACATTTATGAGGGGGAAGTATTTGGCCTTGTTGGGGAATCAGGCTCAGGCAAGACAA
CAGTTGGTCGAGCTATTTTGAAATTGTATGATATTAGTGATGGTGAGATTATTTTTAATGGAGAAAATGTCTCCCAATTA
AAGGGGAAAAAGCTGCATAGCTTTCGTAAGCATGCGCAAATGATCTTCCAAGATCCTCAGGCTAGTCTCAACGGTCGCAT
GAAAATCAGAGACATTGTTGCAGAGGGCTTAGACATTCATGGCTTGACAGCCTCAAAGGCAGAGCGTGAGGCAAGAGTCC
AAGAGCTGTTAAAGCTTGTTGGGCTCAATCAGGATCATTTGACGCGGTACCCACATGAATTTTCCGGTGGCCAACGCCAG
CGGATTGGCATTGCGCGTGCCCTGGCTGTGAAGCCGACCTTTATTATCGCAGATGAGCCGATTTCAGCGCTTGATGTGTC
GATTCAAGCACAGGTAGTGAGTCTCATGCAGCAATTGCAAAAGAAGCGCGGCTTGACCTATCTCTTTATCGCACATGATT
TGTCTATGGTCAAATACATTTCAGACCGTATTGGTGTGATGCATTGGGGCAAAATGCTTGAGATTGGAACATCTGATGAG
GTTTACAATCACCCGATTCACCCTTATACGAAAAGCTTGATCTCAGCCATTCCTGAGCCGGATCCTGAAAAGGAGCGTAA
GCGCATTGCAGAGGTTTATGATCCTAGTCAAGAGCTAGATGGCCAAGAGCGGCAAATGCATGAAATCACTCCTGGGCATT
TTGTCTTAGCGACGCAGGCCGAAGCGGATCAGTACCGCGCAGAGCGTGGCCTCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(30-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

54.248

98.392

0.534
  amiF Streptococcus thermophilus LMG 18311

53.922

98.392

0.531
  amiF Streptococcus salivarius strain HSISS4

53.595

98.392

0.527

Multiple sequence alignment