Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   EL136_RS06960 Genome accession   NZ_LR134317
Coordinates   1463664..1464389 (-) Length   241 a.a.
NCBI ID   WP_111677796.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC6180     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1458664..1469389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL136_RS06930 (NCTC6180_01420) rimP 1459106..1459588 (-) 483 WP_042670147.1 ribosome maturation factor RimP -
  EL136_RS06945 (NCTC6180_01422) trmB 1461137..1461772 (-) 636 WP_115250646.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  EL136_RS06950 (NCTC6180_01423) ccrZ 1461772..1462563 (-) 792 WP_012515084.1 cell cycle regulator CcrZ -
  EL136_RS06955 (NCTC6180_01424) - 1462626..1463660 (-) 1035 WP_012679097.1 ABC transporter permease -
  EL136_RS06960 (NCTC6180_01425) pptA 1463664..1464389 (-) 726 WP_111677796.1 ABC transporter ATP-binding protein Regulator
  EL136_RS06965 (NCTC6180_01426) - 1464927..1465391 (+) 465 WP_014622380.1 hypothetical protein -
  EL136_RS06970 (NCTC6180_01427) - 1465864..1466283 (+) 420 WP_012515079.1 HIT family protein -
  EL136_RS06975 (NCTC6180_01428) - 1466280..1466582 (+) 303 WP_154804099.1 chemotaxis protein -
  EL136_RS06980 (NCTC6180_01429) brpA 1466749..1468011 (-) 1263 WP_154804100.1 biofilm formation/cell division transcriptional regulator BrpA -
  EL136_RS06985 (NCTC6180_01430) - 1468012..1468539 (-) 528 WP_037580088.1 GNAT family N-acetyltransferase -
  EL136_RS06990 (NCTC6180_01431) tsaE 1468532..1468975 (-) 444 WP_043040146.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26522.80 Da        Isoelectric Point: 4.8615

>NTDB_id=1121281 EL136_RS06960 WP_111677796.1 1463664..1464389(-) (pptA) [Streptococcus equi subsp. zooepidemicus strain NCTC6180]
MLNIENVTGGYLNIPVLKDISFSVGNGELVGLIGLNGAGKSTTINEIIGFLKPYKGRISIDGLTLAEHEADYRKKIGFIP
ETPSLYEELTLAEHINTVAMAYDIDVELAHKRAEPFLELFRLTDKLDWFPVHFSKGMKQKVMIICAFVIDPSLFILDEPF
LGLDPLAIADLIKALEVEKSKGKSILMSTHVLDSAEKMCDRFVILHQGQVRAQGTLADLQAVFGDASASLNDIYLALTKE
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1121281 EL136_RS06960 WP_111677796.1 1463664..1464389(-) (pptA) [Streptococcus equi subsp. zooepidemicus strain NCTC6180]
ATGTTAAACATTGAGAATGTCACTGGAGGCTACCTTAATATTCCAGTTTTGAAGGATATTAGCTTTTCTGTTGGAAATGG
AGAGCTAGTAGGGCTTATTGGTCTAAATGGTGCTGGTAAGTCAACAACGATTAATGAAATTATTGGGTTTTTAAAGCCAT
ATAAGGGAAGGATTTCCATTGATGGCTTAACCTTGGCGGAGCATGAAGCTGATTATCGCAAGAAAATTGGCTTTATCCCA
GAAACACCAAGCCTGTATGAGGAGCTGACCTTAGCAGAGCATATCAATACGGTAGCTATGGCCTACGATATTGATGTGGA
GCTGGCACATAAGCGAGCTGAGCCCTTCTTAGAGCTGTTTCGCTTGACGGATAAGTTGGATTGGTTTCCGGTGCATTTTT
CTAAGGGAATGAAGCAAAAGGTTATGATTATTTGCGCTTTTGTCATTGACCCTAGTCTTTTTATTCTTGATGAGCCCTTT
TTGGGGCTTGACCCCTTAGCAATTGCTGATTTGATTAAGGCTTTAGAGGTTGAAAAGTCAAAGGGCAAGTCAATTCTAAT
GAGTACCCATGTGCTGGATTCGGCAGAAAAAATGTGTGACCGTTTTGTGATATTGCATCAGGGGCAGGTGCGTGCGCAAG
GGACTCTGGCGGATTTGCAGGCAGTCTTTGGAGATGCTTCAGCTAGTCTTAATGACATTTACCTAGCGCTGACAAAAGAG
GGGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

74.059

99.17

0.734
  pptA Streptococcus thermophilus LMD-9

73.222

99.17

0.726

Multiple sequence alignment