Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | EL139_RS02640 | Genome accession | NZ_LR134316 |
| Coordinates | 490013..490966 (-) | Length | 317 a.a. |
| NCBI ID | WP_111714783.1 | Uniprot ID | A0A9X8SWY6 |
| Organism | Streptococcus dysgalactiae subsp. equisimilis strain NCTC6181 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 485013..495966
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL139_RS02615 (NCTC6181_00533) | proC | 486093..486869 (+) | 777 | WP_111714795.1 | pyrroline-5-carboxylate reductase | - |
| EL139_RS02620 (NCTC6181_00534) | - | 487008..487445 (-) | 438 | WP_111714792.1 | hypothetical protein | - |
| EL139_RS02625 (NCTC6181_00535) | - | 487463..488143 (-) | 681 | WP_111714790.1 | type II CAAX endopeptidase family protein | - |
| EL139_RS02630 (NCTC6181_00536) | - | 488246..488452 (-) | 207 | WP_111714788.1 | helix-turn-helix transcriptional regulator | - |
| EL139_RS02635 (NCTC6181_00537) | - | 488758..489954 (-) | 1197 | WP_111714785.1 | acetate kinase | - |
| EL139_RS02640 (NCTC6181_00538) | comYH | 490013..490966 (-) | 954 | WP_111714783.1 | class I SAM-dependent methyltransferase | Machinery gene |
| EL139_RS02645 (NCTC6181_00539) | comGG | 491029..491403 (-) | 375 | WP_111714780.1 | competence type IV pilus minor pilin ComGG | - |
| EL139_RS02650 (NCTC6181_00540) | comGF | 491381..491821 (-) | 441 | WP_111714778.1 | competence type IV pilus minor pilin ComGF | - |
| EL139_RS02655 (NCTC6181_00541) | comGE | 491802..492047 (-) | 246 | WP_231871990.1 | competence type IV pilus minor pilin ComGE | - |
| EL139_RS02660 (NCTC6181_00542) | comGD | 492055..492483 (-) | 429 | WP_111714773.1 | competence type IV pilus minor pilin ComGD | - |
| EL139_RS02665 (NCTC6181_00543) | comYC | 492458..492784 (-) | 327 | WP_111714771.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| EL139_RS02670 (NCTC6181_00544) | comYB | 492786..493817 (-) | 1032 | WP_111717873.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| EL139_RS02675 (NCTC6181_00545) | comGA/cglA | 493753..494694 (-) | 942 | WP_111714768.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| EL139_RS02680 (NCTC6181_00546) | - | 494775..495140 (-) | 366 | WP_003055257.1 | DUF1033 family protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 36034.92 Da Isoelectric Point: 4.7910
>NTDB_id=1121207 EL139_RS02640 WP_111714783.1 490013..490966(-) (comYH) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6181]
MNFEKIEEAYQLLLENSQLIENDLKTHIYDAIVEQNSFYLGAEGASPQVAQNINKLKALHLTKEEWRRAYQFIFIKAAQT
EQLQANHQFTPDAIGFILLYLLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKKLDYVGIELDDLLIDLSASIAEVMDSS
ARFIQEDAVRPQLLKESDVVISDLPVGYYPNDDISKRYKVASSEEHTYAHHLLMEQSLKYLKKDGFAIFLAPVNLLTSSQ
SQLLKNWLTGYAQVVALITLPDSIFGHPSNAKSIIVLQKQTDHPTETFVYPIRDLKLAENIHDFMQNFKKWKQDNVN
MNFEKIEEAYQLLLENSQLIENDLKTHIYDAIVEQNSFYLGAEGASPQVAQNINKLKALHLTKEEWRRAYQFIFIKAAQT
EQLQANHQFTPDAIGFILLYLLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKKLDYVGIELDDLLIDLSASIAEVMDSS
ARFIQEDAVRPQLLKESDVVISDLPVGYYPNDDISKRYKVASSEEHTYAHHLLMEQSLKYLKKDGFAIFLAPVNLLTSSQ
SQLLKNWLTGYAQVVALITLPDSIFGHPSNAKSIIVLQKQTDHPTETFVYPIRDLKLAENIHDFMQNFKKWKQDNVN
Nucleotide
Download Length: 954 bp
>NTDB_id=1121207 EL139_RS02640 WP_111714783.1 490013..490966(-) (comYH) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6181]
ATGAATTTTGAAAAAATTGAAGAAGCCTATCAGTTACTTTTAGAGAATAGTCAACTGATTGAAAATGATCTAAAAACACA
TATTTATGATGCCATCGTTGAGCAAAACTCTTTTTATTTAGGTGCTGAGGGAGCCAGTCCTCAAGTTGCCCAGAACATTA
ACAAATTGAAAGCCTTACACCTGACTAAAGAAGAATGGCGTAGAGCTTACCAGTTTATTTTTATTAAGGCAGCTCAGACT
GAGCAGCTCCAAGCAAACCATCAGTTCACGCCAGATGCTATTGGTTTCATTCTGCTATATCTTTTGGAACAATTGAGTGA
CAAAGATAGCCTAGAAGTCCTTGAAATTGGCAGTGGTACGGGAAATCTAGCACAAACTCTCCTCAATAATACGAGTAAGA
AACTTGATTATGTAGGGATTGAACTTGACGACCTCTTAATTGATTTATCAGCAAGTATTGCTGAAGTAATGGACTCTTCA
GCTCGTTTTATTCAAGAAGATGCGGTAAGACCGCAATTGTTAAAAGAAAGCGATGTTGTTATCAGTGACTTGCCAGTGGG
TTATTATCCTAATGATGACATTTCTAAGCGCTATAAGGTAGCTAGTTCTGAGGAACACACCTATGCTCATCATTTGCTCA
TGGAACAATCTTTAAAGTATTTGAAAAAAGATGGTTTTGCCATTTTCTTGGCACCTGTCAATTTGTTGACAAGCTCTCAG
AGCCAATTGTTGAAAAATTGGTTAACTGGCTATGCCCAGGTAGTGGCCTTGATTACTCTACCAGATTCTATATTTGGTCA
TCCTTCTAATGCTAAGTCCATTATTGTCTTGCAAAAGCAGACAGACCATCCGACAGAAACCTTTGTTTATCCTATTCGAG
ACTTGAAACTTGCAGAGAATATTCATGACTTTATGCAAAATTTCAAAAAATGGAAACAGGATAATGTCAATTAA
ATGAATTTTGAAAAAATTGAAGAAGCCTATCAGTTACTTTTAGAGAATAGTCAACTGATTGAAAATGATCTAAAAACACA
TATTTATGATGCCATCGTTGAGCAAAACTCTTTTTATTTAGGTGCTGAGGGAGCCAGTCCTCAAGTTGCCCAGAACATTA
ACAAATTGAAAGCCTTACACCTGACTAAAGAAGAATGGCGTAGAGCTTACCAGTTTATTTTTATTAAGGCAGCTCAGACT
GAGCAGCTCCAAGCAAACCATCAGTTCACGCCAGATGCTATTGGTTTCATTCTGCTATATCTTTTGGAACAATTGAGTGA
CAAAGATAGCCTAGAAGTCCTTGAAATTGGCAGTGGTACGGGAAATCTAGCACAAACTCTCCTCAATAATACGAGTAAGA
AACTTGATTATGTAGGGATTGAACTTGACGACCTCTTAATTGATTTATCAGCAAGTATTGCTGAAGTAATGGACTCTTCA
GCTCGTTTTATTCAAGAAGATGCGGTAAGACCGCAATTGTTAAAAGAAAGCGATGTTGTTATCAGTGACTTGCCAGTGGG
TTATTATCCTAATGATGACATTTCTAAGCGCTATAAGGTAGCTAGTTCTGAGGAACACACCTATGCTCATCATTTGCTCA
TGGAACAATCTTTAAAGTATTTGAAAAAAGATGGTTTTGCCATTTTCTTGGCACCTGTCAATTTGTTGACAAGCTCTCAG
AGCCAATTGTTGAAAAATTGGTTAACTGGCTATGCCCAGGTAGTGGCCTTGATTACTCTACCAGATTCTATATTTGGTCA
TCCTTCTAATGCTAAGTCCATTATTGTCTTGCAAAAGCAGACAGACCATCCGACAGAAACCTTTGTTTATCCTATTCGAG
ACTTGAAACTTGCAGAGAATATTCATGACTTTATGCAAAATTTCAAAAAATGGAAACAGGATAATGTCAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
66.139 |
99.685 |
0.659 |
| comYH | Streptococcus mutans UA159 |
65.823 |
99.685 |
0.656 |