Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EL184_RS13865 Genome accession   NZ_LR134315
Coordinates   2813748..2814377 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain NCTC9064     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2808748..2819377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL184_RS13850 (NCTC9064_02785) helD 2808990..2811044 (-) 2055 WP_089625372.1 DNA helicase IV -
  EL184_RS13855 (NCTC9064_02786) yccF 2811167..2811613 (+) 447 WP_001261235.1 YccF domain-containing protein -
  EL184_RS13860 (NCTC9064_02787) yccS 2811623..2813785 (+) 2163 WP_000875061.1 YccS family putative transporter -
  EL184_RS13865 (NCTC9064_02788) sxy/tfoX 2813748..2814377 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EL184_RS13870 (NCTC9064_02789) sulA 2814596..2815105 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  EL184_RS13875 (NCTC9064_02790) ompA 2815462..2816514 (+) 1053 WP_000750419.1 porin OmpA -
  EL184_RS13880 (NCTC9064_02791) matP 2816589..2817041 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  EL184_RS13885 (NCTC9064_02792) ycbZ 2817227..2818987 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1121182 EL184_RS13865 WP_000839153.1 2813748..2814377(-) (sxy/tfoX) [Escherichia coli strain NCTC9064]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1121182 EL184_RS13865 WP_000839153.1 2813748..2814377(-) (sxy/tfoX) [Escherichia coli strain NCTC9064]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment