Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   PSAB_RS17215 Genome accession   NZ_CP004078
Coordinates   3722276..3722680 (+) Length   134 a.a.
NCBI ID   WP_051529877.1    Uniprot ID   -
Organism   Paenibacillus sabinae T27     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3717276..3727680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSAB_RS17170 (PSAB_17180) - 3717333..3717725 (+) 393 WP_025335823.1 sigma-70 family RNA polymerase sigma factor -
  PSAB_RS17175 (PSAB_17185) - 3717776..3717976 (+) 201 WP_025335824.1 helix-turn-helix domain-containing protein -
  PSAB_RS17185 (PSAB_17195) - 3718569..3718838 (+) 270 WP_025335826.1 helix-turn-helix domain-containing protein -
  PSAB_RS17190 (PSAB_17200) - 3718916..3720127 (+) 1212 WP_025335827.1 tyrosine-type recombinase/integrase -
  PSAB_RS17200 (PSAB_17205) - 3720520..3720864 (-) 345 WP_025335828.1 WGxxGxxG family protein -
  PSAB_RS25990 (PSAB_17210) - 3720996..3721151 (+) 156 WP_193373902.1 hypothetical protein -
  PSAB_RS17205 (PSAB_17215) - 3721148..3721420 (-) 273 WP_025335829.1 YolD-like family protein -
  PSAB_RS17210 (PSAB_17220) - 3721584..3722099 (-) 516 WP_025335830.1 hypothetical protein -
  PSAB_RS17215 (PSAB_17225) nucA/comI 3722276..3722680 (+) 405 WP_051529877.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  PSAB_RS17220 (PSAB_17230) - 3722683..3723132 (-) 450 WP_025335832.1 ASCH domain-containing protein -
  PSAB_RS24660 (PSAB_17235) - 3723742..3724446 (-) 705 WP_084266553.1 Ig-like domain-containing protein -
  PSAB_RS17230 (PSAB_17240) - 3724501..3725319 (-) 819 WP_025335834.1 protein-glutamine gamma-glutamyltransferase -
  PSAB_RS25995 (PSAB_17245) - 3725744..3725908 (-) 165 WP_165094904.1 hypothetical protein -
  PSAB_RS17245 (PSAB_17250) pyrE 3726111..3726752 (-) 642 WP_025335835.1 orotate phosphoribosyltransferase -
  PSAB_RS17250 (PSAB_17255) pyrF 3726749..3727465 (-) 717 WP_038597286.1 orotidine-5'-phosphate decarboxylase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15176.05 Da        Isoelectric Point: 4.7430

>NTDB_id=112117 PSAB_RS17215 WP_051529877.1 3722276..3722680(+) (nucA/comI) [Paenibacillus sabinae T27]
MLLLLLLLSYLAERNGWDFRNAPSSDKEVVQLIFPSDEYPETAKHIEKAIERGESSVCTINREGAEENRRESLKGIPTKK
HYDRDEWPMAMCEEGGTGADIAYISPADNRGAGSWVGNQLEKLKDGTRVEFIFR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=112117 PSAB_RS17215 WP_051529877.1 3722276..3722680(+) (nucA/comI) [Paenibacillus sabinae T27]
ATGCTTCTGCTGCTTTTGCTGCTGTCGTATCTTGCCGAAAGAAACGGGTGGGATTTCAGGAACGCTCCTTCTTCCGATAA
GGAAGTGGTACAGCTGATTTTTCCATCAGACGAGTATCCGGAAACGGCAAAGCATATTGAAAAAGCGATCGAGAGAGGCG
AGTCCAGCGTATGCACGATCAACCGTGAAGGAGCTGAAGAGAACCGCCGGGAGTCGCTGAAGGGAATTCCCACCAAAAAA
CATTATGATCGCGATGAATGGCCCATGGCCATGTGCGAGGAAGGCGGAACGGGAGCGGACATCGCATACATATCCCCAGC
CGATAACCGTGGTGCAGGCAGCTGGGTCGGCAATCAGCTGGAGAAATTGAAGGATGGGACCAGAGTAGAATTTATCTTTC
GATGA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(40-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

66.99

76.866

0.515

Multiple sequence alignment