Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   EL121_RS06770 Genome accession   NZ_LR134310
Coordinates   1426513..1426875 (-) Length   120 a.a.
NCBI ID   WP_039198614.1    Uniprot ID   -
Organism   Actinobacillus equuli strain NCTC8529     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1421513..1431875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL121_RS06755 (NCTC8529_01348) - 1422307..1422927 (+) 621 WP_039198607.1 MerR family transcriptional regulator -
  EL121_RS06760 (NCTC8529_01349) gshAB 1423019..1425292 (-) 2274 WP_039198610.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  EL121_RS06765 (NCTC8529_01350) asd 1425444..1426337 (-) 894 WP_039198612.1 archaetidylserine decarboxylase -
  EL121_RS06770 (NCTC8529_01351) comEA/comE1 1426513..1426875 (-) 363 WP_039198614.1 helix-hairpin-helix domain-containing protein Machinery gene
  EL121_RS06775 (NCTC8529_01352) - 1427204..1428580 (+) 1377 WP_039198615.1 LysM-like peptidoglycan-binding domain-containing protein -
  EL121_RS06780 (NCTC8529_01353) - 1428654..1429109 (+) 456 WP_231554675.1 MliC family protein -
  EL121_RS06785 (NCTC8529_01354) waaF 1429192..1430229 (+) 1038 WP_039198617.1 lipopolysaccharide heptosyltransferase II -
  EL121_RS06790 (NCTC8529_01355) rfaC 1430305..1431264 (+) 960 WP_039199094.1 lipopolysaccharide heptosyltransferase RfaC -
  EL121_RS06795 (NCTC8529_01356) rpsL 1431388..1431762 (+) 375 WP_005543325.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 12814.65 Da        Isoelectric Point: 10.0523

>NTDB_id=1121011 EL121_RS06770 WP_039198614.1 1426513..1426875(-) (comEA/comE1) [Actinobacillus equuli strain NCTC8529]
MKTRSKFGLSLLIGMLSTGTFAAEKVKPTDTEPTPVVQNAQAVTGHNHAEMMTNANLVNINTATAAEIQDKLVGIGTKKA
QAIVEYRTKNGAFSSLEQLTDVSGIGKATLDKNRDRIALQ

Nucleotide


Download         Length: 363 bp        

>NTDB_id=1121011 EL121_RS06770 WP_039198614.1 1426513..1426875(-) (comEA/comE1) [Actinobacillus equuli strain NCTC8529]
ATGAAAACACGTTCAAAATTTGGTCTAAGTTTATTAATCGGTATGTTATCTACCGGTACGTTTGCAGCTGAAAAAGTAAA
GCCTACCGACACAGAACCTACTCCTGTAGTTCAAAACGCACAAGCAGTCACAGGGCATAACCATGCCGAAATGATGACCA
ATGCAAACTTAGTGAACATTAACACAGCGACCGCCGCTGAAATCCAAGATAAATTGGTTGGTATTGGCACTAAAAAAGCA
CAAGCGATAGTTGAATATCGTACGAAAAACGGCGCGTTTAGCAGTTTGGAACAACTTACCGATGTATCTGGCATAGGTAA
AGCTACGCTTGATAAAAATCGTGATCGCATTGCATTACAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

63.333

100

0.633

Multiple sequence alignment