Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   EL115_RS07320 Genome accession   NZ_LR134307
Coordinates   1460669..1462435 (-) Length   588 a.a.
NCBI ID   WP_126441660.1    Uniprot ID   -
Organism   Streptococcus milleri strain NCTC10708     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1455669..1467435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL115_RS07300 (NCTC10708_01456) - 1456533..1457930 (+) 1398 WP_126441656.1 glycoside hydrolase family 1 protein -
  EL115_RS07305 (NCTC10708_01457) - 1458064..1458384 (-) 321 WP_003031767.1 PTS cellobiose transporter subunit IIA -
  EL115_RS07310 (NCTC10708_01458) - 1458395..1458709 (-) 315 WP_003031794.1 PTS cellobiose transporter subunit IIB -
  EL115_RS07315 (NCTC10708_01459) rcrQ 1458919..1460679 (-) 1761 WP_126441658.1 ABC transporter ATP-binding protein Regulator
  EL115_RS07320 (NCTC10708_01460) rcrP 1460669..1462435 (-) 1767 WP_126441660.1 ABC transporter ATP-binding protein Regulator
  EL115_RS07325 (NCTC10708_01461) - 1462428..1462886 (-) 459 WP_003070542.1 MarR family winged helix-turn-helix transcriptional regulator -
  EL115_RS07330 (NCTC10708_01462) - 1463057..1464244 (-) 1188 WP_003070544.1 NADH-dependent flavin oxidoreductase -
  EL115_RS07335 (NCTC10708_01463) - 1464511..1464921 (-) 411 WP_119056604.1 peptide deformylase -
  EL115_RS07340 (NCTC10708_01464) scrK 1464987..1465886 (-) 900 WP_006270296.1 fructokinase ScrK -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 65186.02 Da        Isoelectric Point: 7.9859

>NTDB_id=1120900 EL115_RS07320 WP_126441660.1 1460669..1462435(-) (rcrP) [Streptococcus milleri strain NCTC10708]
MVKLFKRLTVKEVGMIIISILFTCLAVYLDLEVPTYISKITELLQTKGTVVSDLWNPGLKMIGLSFASFLSAVVVGFIAA
RLAASFTTSLRSDIFNRVLDYSNAEIKRFSIPSLLTRTTNDLTQIQLMITMGLQVVTRGPIMAIWAITKIIGKSEYWLWA
VIVAVIVNMIMTTVLMTLAFPKQSVIQRLTDKLNSITRESLTGIRVVRAYNAEDYQDDKFAGANAEVTRLNLFVSRLMAI
LNPIMMGISSGLTLAIYWIGAYLIQDAALPGRLPIFSDMVVFMSYAMQVVMGFMLMAALFIVLPRTLVSAGRINEVLDLH
STIESPMQPKTAKDVKGEVVFDNVSFRYTKNSEAVIEHVSFTAKAGETVAFIGSTGSGKSTLISLIPRFYDVTEGRILVD
GVNVKDYQLEDLHNKIGYIPQKAVLFSGDIKSNLDFGQSNESPLDDEKMWSALDLAQARSFVEEKEGGLHSEVAQSGTNF
SGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRILREELAKKVKATTRLIVAQRISTIMDADQILVLDKGKVVGQGT
HKELLATNEVYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=1120900 EL115_RS07320 WP_126441660.1 1460669..1462435(-) (rcrP) [Streptococcus milleri strain NCTC10708]
ATGGTTAAATTGTTTAAACGTTTAACTGTCAAAGAAGTAGGGATGATTATCATCAGTATCTTATTTACTTGTTTGGCAGT
TTATTTGGACTTAGAGGTTCCAACCTATATTTCAAAAATTACGGAACTCCTACAGACGAAAGGAACAGTCGTTTCTGATT
TGTGGAATCCGGGCTTGAAAATGATTGGATTGTCATTTGCTAGTTTTCTCAGTGCTGTGGTAGTTGGTTTTATTGCGGCT
AGATTGGCAGCTAGCTTTACAACGAGCTTGCGCTCAGATATTTTCAATCGTGTACTGGATTATTCAAATGCTGAGATTAA
GAGATTTTCTATTCCAAGTCTTTTAACGCGGACAACCAATGATCTTACGCAAATTCAGCTTATGATTACTATGGGCTTGC
AAGTCGTGACTCGTGGACCGATTATGGCGATTTGGGCGATTACAAAAATCATTGGGAAATCAGAATACTGGCTGTGGGCA
GTTATTGTCGCAGTTATTGTGAATATGATTATGACGACAGTTTTGATGACGTTGGCCTTTCCAAAGCAATCTGTTATTCA
ACGGTTGACTGATAAGTTAAATAGTATTACGCGTGAAAGTCTAACAGGGATTCGTGTTGTTCGAGCTTACAATGCTGAAG
ACTATCAAGATGATAAATTTGCAGGGGCAAATGCTGAAGTGACTCGGTTGAATCTCTTTGTTAGTCGGCTCATGGCTATT
TTAAATCCAATTATGATGGGGATTTCGAGTGGTTTGACCTTGGCAATATACTGGATTGGTGCTTACTTGATTCAAGATGC
AGCTTTACCAGGACGTTTGCCAATCTTTAGCGACATGGTTGTCTTTATGTCTTATGCTATGCAGGTCGTAATGGGCTTCA
TGCTCATGGCTGCTCTGTTTATCGTTCTTCCTCGTACCTTGGTGTCTGCGGGACGGATTAATGAGGTACTTGATTTGCAT
TCAACGATTGAATCTCCAATGCAACCCAAAACAGCTAAAGATGTCAAAGGTGAAGTGGTATTTGACAATGTTTCTTTCCG
CTATACTAAAAACTCTGAGGCTGTCATTGAACATGTTAGCTTTACAGCTAAAGCGGGCGAAACGGTAGCTTTCATCGGAT
CAACTGGTTCTGGGAAATCAACCCTAATTAGTTTAATTCCTCGTTTCTATGATGTGACAGAAGGAAGAATTTTAGTAGAT
GGCGTGAATGTAAAAGATTATCAGTTGGAAGATTTGCATAATAAAATTGGCTACATTCCACAAAAAGCTGTTCTCTTTTC
TGGTGATATAAAGAGTAATTTAGATTTTGGACAAAGCAATGAAAGTCCATTGGATGATGAAAAAATGTGGTCTGCGTTGG
ACTTGGCACAGGCGAGATCATTTGTTGAAGAAAAAGAAGGTGGTCTGCACTCAGAGGTCGCACAAAGCGGAACCAATTTC
TCTGGTGGTCAAAAGCAGCGGCTGGCGATTGCGCGTGCACTTGCTAGGAAACCTGAAATTCTGATTTTTGACGATTCATT
TTCAGCACTGGACTATAAGACAGACCGTATTTTGCGAGAAGAATTGGCGAAAAAAGTGAAAGCTACAACCAGATTGATCG
TAGCTCAGCGGATTTCAACGATCATGGATGCTGATCAGATCTTGGTGTTGGATAAAGGGAAAGTTGTTGGGCAAGGAACT
CACAAAGAGCTGCTAGCGACAAACGAAGTTTATCAAGAAATTGCTTACTCACAATTATCAAAGGAGGAATTGGAAAATGG
AAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(16-291)

ABC transporter (ABC_tran)

(357-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

70.5

100

0.719

Multiple sequence alignment