Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EL115_RS07315 Genome accession   NZ_LR134307
Coordinates   1458919..1460679 (-) Length   586 a.a.
NCBI ID   WP_126441658.1    Uniprot ID   -
Organism   Streptococcus milleri strain NCTC10708     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1453919..1465679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL115_RS07290 (NCTC10708_01454) - 1454362..1455087 (-) 726 WP_003070533.1 GntR family transcriptional regulator -
  EL115_RS07295 (NCTC10708_01455) celB 1455121..1456389 (-) 1269 WP_126441654.1 PTS cellobiose transporter subunit IIC -
  EL115_RS07300 (NCTC10708_01456) - 1456533..1457930 (+) 1398 WP_126441656.1 glycoside hydrolase family 1 protein -
  EL115_RS07305 (NCTC10708_01457) - 1458064..1458384 (-) 321 WP_003031767.1 PTS cellobiose transporter subunit IIA -
  EL115_RS07310 (NCTC10708_01458) - 1458395..1458709 (-) 315 WP_003031794.1 PTS cellobiose transporter subunit IIB -
  EL115_RS07315 (NCTC10708_01459) rcrQ 1458919..1460679 (-) 1761 WP_126441658.1 ABC transporter ATP-binding protein Regulator
  EL115_RS07320 (NCTC10708_01460) rcrP 1460669..1462435 (-) 1767 WP_126441660.1 ABC transporter ATP-binding protein Regulator
  EL115_RS07325 (NCTC10708_01461) - 1462428..1462886 (-) 459 WP_003070542.1 MarR family winged helix-turn-helix transcriptional regulator -
  EL115_RS07330 (NCTC10708_01462) - 1463057..1464244 (-) 1188 WP_003070544.1 NADH-dependent flavin oxidoreductase -
  EL115_RS07335 (NCTC10708_01463) - 1464511..1464921 (-) 411 WP_119056604.1 peptide deformylase -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 65192.35 Da        Isoelectric Point: 6.5139

>NTDB_id=1120899 EL115_RS07315 WP_126441658.1 1458919..1460679(-) (rcrQ) [Streptococcus milleri strain NCTC10708]
MENKKSSLFSQVKPYIKGFQFPLLVAFVGAMLSSVITVYGPVKLKEITNLITEGMRSRIDLKAISNIALFLAVLYAVGTV
LNYMQSFIISSVVQHFSKRLRTAIAEKINKLPLRYFDSHSQGDTLSRVTNDVDTVGQSLNQSLGTVISSSLLLIAVLFMM
FYNNVVLSFVTIGSVLIGFVFVALIMGKSQRFFRTQQENLASVNGYVEEMYSGHNVIVSYNATEESKKAFQMLNTNLYSS
MWKSQFISGIMMPLMIFTGNFGYVMVVLVGASMALNGDVTMGTIVAFMVYVRTFSQPLSQIAQGITTLQQASAAMGRVFE
FLAEPEMENDEHKAQQLTTLKGDVTFDNVFFGYNPDRTIIHDFSAKAKAGQKIAIVGPTGAGKTTIVNLLMKFYEIEKGR
ITIDGIDTKQMKRSEVHDAFSMVLQDTWLFEGTIKENLIYNQKNISDEAVVAATKAVGVHHFIKTLPKGYDTVLDDTVSL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMRNGNIIEQGN
HDQLMEENGFYADLYNSQFDEDAEYA

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=1120899 EL115_RS07315 WP_126441658.1 1458919..1460679(-) (rcrQ) [Streptococcus milleri strain NCTC10708]
ATGGAAAATAAAAAATCATCTTTATTTAGCCAAGTGAAACCCTATATCAAAGGATTCCAGTTTCCATTGCTCGTTGCATT
TGTGGGAGCAATGCTATCTAGTGTTATCACGGTTTATGGTCCGGTCAAATTAAAAGAAATTACCAATCTTATCACAGAAG
GAATGAGAAGTCGAATTGATCTGAAGGCGATCTCTAATATTGCTCTTTTCTTAGCCGTTTTATATGCGGTGGGTACTGTA
TTAAATTATATGCAATCCTTTATTATTTCGTCCGTCGTTCAGCATTTTTCAAAACGTTTACGGACAGCCATTGCGGAGAA
AATTAATAAATTACCCTTGCGGTATTTTGATAGCCATTCGCAAGGGGACACTCTTTCACGAGTCACTAATGACGTGGATA
CTGTTGGACAATCTCTGAACCAAAGTTTAGGCACAGTGATTTCATCAAGTTTGCTTCTTATTGCTGTTCTCTTTATGATG
TTTTATAACAACGTGGTTCTATCCTTTGTAACGATTGGATCGGTTTTGATTGGTTTTGTCTTTGTTGCGTTGATTATGGG
CAAATCACAACGGTTTTTCCGCACACAACAAGAGAATCTTGCTAGTGTCAATGGATATGTGGAAGAGATGTATTCTGGTC
ACAATGTCATTGTCAGCTATAATGCTACCGAGGAATCAAAAAAAGCCTTTCAAATGCTTAATACGAATCTTTATAGTAGT
ATGTGGAAGTCCCAATTTATTTCTGGAATTATGATGCCGTTAATGATATTTACAGGGAACTTTGGTTATGTGATGGTCGT
ATTGGTTGGAGCGAGCATGGCATTGAATGGTGATGTCACGATGGGGACGATTGTTGCCTTTATGGTATATGTACGGACTT
TTTCTCAACCATTGTCCCAAATTGCACAAGGGATTACTACTCTTCAACAAGCTAGCGCTGCTATGGGACGCGTATTTGAA
TTTTTAGCAGAGCCTGAAATGGAAAATGATGAACACAAAGCGCAACAGCTCACAACTTTAAAGGGTGATGTTACCTTTGA
TAATGTATTCTTTGGCTACAATCCGGATCGAACAATTATTCATGATTTTTCTGCCAAGGCCAAAGCCGGCCAAAAGATTG
CTATTGTTGGTCCGACCGGTGCTGGGAAAACGACGATTGTCAATCTGTTGATGAAATTTTATGAAATTGAGAAAGGGCGG
ATTACTATTGATGGTATTGATACCAAGCAAATGAAACGCTCTGAAGTGCATGATGCTTTCTCAATGGTCCTTCAAGACAC
TTGGTTATTTGAGGGAACGATTAAAGAAAATTTGATTTACAATCAGAAGAATATTTCTGATGAAGCGGTTGTGGCAGCGA
CTAAAGCTGTCGGGGTTCATCACTTTATCAAGACTTTGCCAAAAGGATACGATACAGTGTTGGATGACACAGTCAGTCTT
TCTGTTGGGCAAAAGCAATTGCTGACTATCGCGCGTGCACTTCTTAAGGATGCTCCCTTACTTATCTTGGATGAAGCGAC
TTCATCTGTTGATACGCGGACAGAAGAATTGATCCAAAAAGCGATGGATAAGTTGATGGAAGGAAGGACTTCTTTCGTCA
TTGCTCACCGCTTGTCGACCATTCGTAATGCTGATTTGATTTTGGTCATGCGTAATGGTAATATCATTGAACAAGGAAAT
CACGATCAATTGATGGAAGAAAATGGCTTCTATGCTGATCTTTACAATAGTCAATTCGATGAAGACGCAGAGTATGCGTA
A

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-508)

ABC transporter transmembrane region (ABC_membrane)

(23-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

70.962

99.317

0.705

Multiple sequence alignment