Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HPYLSS1_RS05855 Genome accession   NZ_CP009259
Coordinates   1214132..1215181 (+) Length   349 a.a.
NCBI ID   WP_077232351.1    Uniprot ID   -
Organism   Helicobacter pylori SS1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1209132..1220181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPYLSS1_RS05835 (HPYLSS1_01132) - 1209290..1210033 (+) 744 WP_002203616.1 carbonic anhydrase -
  HPYLSS1_RS05840 (HPYLSS1_01133) - 1210273..1211283 (-) 1011 WP_077232348.1 DUF874 family protein -
  HPYLSS1_RS05845 (HPYLSS1_01134) asd 1211715..1212755 (-) 1041 WP_077232349.1 aspartate-semialdehyde dehydrogenase -
  HPYLSS1_RS05850 (HPYLSS1_01135) hisS 1212742..1214070 (-) 1329 WP_077232350.1 histidine--tRNA ligase -
  HPYLSS1_RS05855 (HPYLSS1_01136) waaF 1214132..1215181 (+) 1050 WP_077232351.1 lipopolysaccharide heptosyltransferase II Regulator
  HPYLSS1_RS05860 (HPYLSS1_01137) - 1215373..1215708 (-) 336 WP_077232352.1 flagellar protein -
  HPYLSS1_RS05870 (HPYLSS1_01138) - 1215940..1216929 (+) 990 WP_077232353.1 aldo/keto reductase -
  HPYLSS1_RS05875 (HPYLSS1_01139) fusA 1217467..1219545 (-) 2079 WP_077232354.1 elongation factor G -
  HPYLSS1_RS05880 (HPYLSS1_01140) rpsG 1219557..1220024 (-) 468 WP_001254355.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39428.12 Da        Isoelectric Point: 9.2347

>NTDB_id=112078 HPYLSS1_RS05855 WP_077232351.1 1214132..1215181(+) (waaF) [Helicobacter pylori SS1]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKNHYPNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATYKL
AQKIGRCDIAIALNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLEKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGSLKNPLLFH
NAYNLCGKTSIEELIECIAILDLFITNDSGPMHAAASVQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLEATRTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=112078 HPYLSS1_RS05855 WP_077232351.1 1214132..1215181(+) (waaF) [Helicobacter pylori SS1]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTCTTTTACACCCTTAAAAACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTTACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCGCATTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAAT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAGAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAATTAGCCTTTAATCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTCATTAAAAAACCCTTTATTGTTCCAT
AATGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTAATAGAGTGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGCGGCTGCTAGCGTGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCACTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTAGAGGCCACTCGCACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.439

99.14

0.381

Multiple sequence alignment