Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   EL258_RS06660 Genome accession   NZ_LR134302
Coordinates   1467065..1468141 (-) Length   358 a.a.
NCBI ID   WP_318269771.1    Uniprot ID   -
Organism   Achromobacter spanius strain NCTC13519     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1462065..1473141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL258_RS06650 (NCTC13519_01343) - 1462228..1463886 (+) 1659 WP_100854476.1 CYTH and CHAD domain-containing protein -
  EL258_RS06655 (NCTC13519_01344) - 1464806..1467004 (+) 2199 WP_100854475.1 phosphocholine-specific phospholipase C -
  EL258_RS06660 (NCTC13519_01345) pilA 1467065..1468141 (-) 1077 WP_318269771.1 signal recognition particle-docking protein FtsY Machinery gene
  EL258_RS06670 (NCTC13519_01347) rsmD 1468599..1469165 (+) 567 WP_100857599.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  EL258_RS06675 (NCTC13519_01348) coaD 1469224..1469727 (+) 504 WP_046807920.1 pantetheine-phosphate adenylyltransferase -
  EL258_RS06680 (NCTC13519_01349) - 1469834..1470085 (+) 252 WP_006221659.1 YfhL family 4Fe-4S dicluster ferredoxin -
  EL258_RS06685 (NCTC13519_01350) - 1470082..1471296 (+) 1215 WP_100854474.1 benzoate/H(+) symporter BenE family transporter -
  EL258_RS06690 (NCTC13519_01351) - 1471361..1471747 (-) 387 WP_100854473.1 MOSC N-terminal beta barrel domain-containing protein -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 36951.51 Da        Isoelectric Point: 9.4922

>NTDB_id=1120744 EL258_RS06660 WP_318269771.1 1467065..1468141(-) (pilA) [Achromobacter spanius strain NCTC13519]
MPAPTVSVAPTAAPAPIVTPVTAPTPAPASTPAPAPTPAPAPAPTPQPAAAEAPKKSSWLSRLKQGLSRTGQSIGGIFVG
VKVDENLFEELESALIMADAGLEATEKLLTALRARVKKERIEDPAKVKTALRQLLADHLRPLERGFNLTSAKPLVVMIAG
VNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVSVISQDGGDPAAVAFDAVNAGRARGMGVVMV
DTAGRLPTQLHLMEELKKIRRVIGKADASAPHEVLLVVDGNTGQNALAQIRAFDAAINLTGLVVTKLDGTAKGGTLAAVA
AGSQGVRPIPVYWIGVGESLEDLQPFVADEFAGALLAD

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=1120744 EL258_RS06660 WP_318269771.1 1467065..1468141(-) (pilA) [Achromobacter spanius strain NCTC13519]
ATGCCTGCGCCTACGGTTTCGGTTGCGCCGACTGCCGCGCCTGCACCGATCGTAACGCCGGTGACTGCGCCAACGCCCGC
GCCAGCATCCACGCCGGCACCCGCGCCAACGCCCGCGCCGGCACCCGCGCCAACCCCCCAACCCGCTGCCGCCGAGGCAC
CCAAGAAGTCGTCATGGCTGTCGCGCTTGAAGCAGGGCTTGTCGCGCACGGGGCAGAGCATTGGCGGCATTTTCGTTGGC
GTCAAGGTCGACGAAAACCTGTTCGAGGAACTCGAATCGGCGCTCATTATGGCCGATGCGGGCTTGGAGGCCACCGAGAA
ACTGCTGACCGCGCTGCGTGCGCGGGTCAAGAAGGAACGCATTGAAGACCCCGCCAAGGTGAAGACGGCGCTGCGCCAGT
TGCTGGCCGACCACCTGCGCCCGCTGGAGCGCGGCTTCAACCTCACCAGCGCAAAGCCGCTGGTGGTGATGATTGCCGGC
GTTAACGGCGCGGGCAAGACCACGTCCATCGGCAAGCTGGCGCACACATTCCAGCGCCAGGGTGCAAGCGTGCTGCTGGC
GGCAGGCGACACCTTTCGTGCCGCGGCACGCGAACAGCTTGTGGAATGGGGCAGCCGCAACAACGTCAGCGTGATTTCTC
AGGACGGCGGGGACCCGGCCGCCGTGGCGTTCGATGCCGTCAACGCCGGACGCGCGCGCGGCATGGGCGTGGTCATGGTG
GATACCGCCGGCCGCTTGCCCACGCAGTTGCACCTGATGGAAGAGCTGAAAAAGATCCGCCGCGTCATCGGCAAGGCGGA
TGCGTCGGCGCCGCACGAAGTGCTGTTGGTGGTGGACGGCAACACCGGCCAGAACGCACTGGCGCAGATTCGCGCCTTTG
ATGCGGCCATCAACCTGACGGGCCTGGTCGTGACCAAGCTGGACGGCACCGCCAAGGGCGGCACGCTGGCCGCCGTGGCC
GCGGGTAGCCAGGGCGTGCGGCCGATTCCGGTGTATTGGATTGGCGTGGGCGAAAGCCTGGAAGATCTTCAGCCCTTCGT
GGCGGATGAGTTCGCGGGCGCGCTGCTGGCGGACTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(154-356)

SRP54-type protein, helical bundle domain (SRP54_N)

(72-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

54.955

93.017

0.511

Multiple sequence alignment