Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EL151_RS13915 Genome accession   NZ_LR134296
Coordinates   2849551..2850180 (-) Length   209 a.a.
NCBI ID   WP_000839131.1    Uniprot ID   -
Organism   Escherichia coli strain NCTC9041     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2844551..2855180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL151_RS13900 (NCTC9041_02755) helD 2844793..2846847 (-) 2055 WP_001295354.1 DNA helicase IV -
  EL151_RS13905 (NCTC9041_02756) yccF 2846970..2847416 (+) 447 WP_001261235.1 YccF domain-containing protein -
  EL151_RS13910 (NCTC9041_02757) yccS 2847426..2849588 (+) 2163 WP_000875061.1 YccS family putative transporter -
  EL151_RS13915 (NCTC9041_02758) sxy/tfoX 2849551..2850180 (-) 630 WP_000839131.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EL151_RS13920 (NCTC9041_02759) sulA 2850399..2850908 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  EL151_RS13925 (NCTC9041_02760) ompA 2851265..2852305 (+) 1041 WP_000750416.1 porin OmpA -
  EL151_RS13930 (NCTC9041_02761) matP 2852381..2852833 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EL151_RS13935 (NCTC9041_02762) ycbZ 2853019..2854779 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24177.10 Da        Isoelectric Point: 9.2180

>NTDB_id=1120635 EL151_RS13915 WP_000839131.1 2849551..2850180(-) (sxy/tfoX) [Escherichia coli strain NCTC9041]
MKSLSYKRIYKSQEYLAMLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1120635 EL151_RS13915 WP_000839131.1 2849551..2850180(-) (sxy/tfoX) [Escherichia coli strain NCTC9041]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAATGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment