Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EL097_RS04105 Genome accession   NZ_LR134293
Coordinates   789558..790919 (+) Length   453 a.a.
NCBI ID   WP_099983187.1    Uniprot ID   -
Organism   Streptococcus canis strain NCTC12191     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 784558..795919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL097_RS04090 (NCTC12191_00806) - 786240..788024 (+) 1785 WP_003045507.1 ABC transporter ATP-binding protein -
  EL097_RS04095 (NCTC12191_00807) - 788141..788908 (+) 768 WP_003045505.1 epoxyqueuosine reductase QueH -
  EL097_RS04100 (NCTC12191_00808) - 789014..789460 (+) 447 WP_003045504.1 dUTP diphosphatase -
  EL097_RS04105 (NCTC12191_00809) radA 789558..790919 (+) 1362 WP_099983187.1 DNA repair protein RadA Machinery gene
  EL097_RS04110 (NCTC12191_00810) - 791111..791605 (+) 495 WP_003045500.1 carbonic anhydrase -
  EL097_RS04115 (NCTC12191_00811) - 791759..792475 (+) 717 WP_003045499.1 TIGR00266 family protein -
  EL097_RS04120 (NCTC12191_00812) - 792729..793175 (+) 447 WP_003045497.1 LytTR family DNA-binding domain-containing protein -
  EL097_RS04125 (NCTC12191_00813) - 793179..793856 (+) 678 WP_003045495.1 hypothetical protein -
  EL097_RS04130 (NCTC12191_00814) - 793879..794337 (+) 459 WP_039994712.1 MFS transporter -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49298.70 Da        Isoelectric Point: 6.6509

>NTDB_id=1120500 EL097_RS04105 WP_099983187.1 789558..790919(+) (radA) [Streptococcus canis strain NCTC12191]
MAKKKATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLTGEKSKPIKLKDVDNISYHRTQTDMAEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRSEVE
NLQPDFLIIDSIQTIMSPEITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSAGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQSLVTPSIFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIR
RVTRIEQRINEATKLGFTKIYAPKNALQGIAIPKGIAVVGVTTVGQVLKAVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1120500 EL097_RS04105 WP_099983187.1 789558..790919(+) (radA) [Streptococcus canis strain NCTC12191]
ATAGCAAAGAAAAAAGCGACCTTCATTTGTCAAGAGTGTGGCTACCAGTCACCCAAATATTTAGGGCGCTGTCCAAACTG
TTCAGCCTGGTCTTCTTTTGTGGAAGAAGTAGAGGTCAAAGAAGTCAAAAATGCTCGTGTTAGTTTGACAGGTGAGAAGA
GTAAACCTATTAAACTAAAAGATGTGGACAATATCAGCTATCATCGGACACAGACCGATATGGCAGAATTTAATCGTGTT
CTCGGTGGCGGTGTCGTTCCAGGAAGTTTGGTCTTAATCGGTGGCGATCCAGGTATTGGAAAATCCACCTTGCTCTTGCA
GGTATCCACCCAGCTAGCCAATAAGGGAACCGTTCTCTATGTCTCCGGGGAAGAATCAGCAGAGCAGATTAAACTGCGCA
GTGAGCGCTTGGGGGATATTGACAATGAATTTTACCTCTATGCTGAGACTAATATGCAGGCTATTCGATCAGAAGTTGAA
AACTTGCAGCCAGATTTCTTGATTATTGATTCTATTCAAACCATTATGAGTCCTGAGATTACAGGTGTTCAAGGATCAGT
TAGTCAGGTGAGAGAAGTCACTGCCGAATTGATGCAGTTGGCAAAGACCAATAATATTGCAACCTTTATTGTGGGGCATG
TCACCAAGGAAGGGACTTTGGCAGGACCTCGTATGTTAGAACACATGGTGGACACCGTTCTCTACTTTGAGGGGGAAAGG
CATCATACTTTTCGTATTTTGCGGGCTGTGAAAAATCGCTTTGGCTCTACGAATGAGATTGGTATTTTTGAAATGCAGTC
AGCCGGACTTGTTGAGGTTCTAAATCCAAGTCAAGTCTTTCTTGAAGAGCGTTTAGATGGTGCCACAGGTTCAGCCATCG
TGGTAACCATGGAAGGCAGCCGACCGATTTTAGCGGAGGTTCAATCTTTGGTAACACCATCTATTTTTGGCAATGCTAGA
CGAACCACAACTGGACTTGATTTCAATCGTGTAAGCCTCATTATGGCAGTCTTAGAAAAACGCTGTGGGCTTCTTTTACA
AAATCAAGATGCCTACCTTAAATCAGCTGGTGGTGTCAAATTGGATGAGCCTGCTATTGATTTGGCAGTCGCTGTGGCCA
TTGCTTCTAGTTACAAGGAAAAACCAACTAGCCCGCAAGAAGCTTTCTTAGGCGAGATTGGGTTAACAGGTGAGATTCGG
CGAGTGACCCGTATTGAGCAACGGATTAATGAAGCAACTAAGCTAGGCTTTACTAAAATCTACGCCCCTAAAAATGCTCT
GCAAGGGATTGCTATTCCAAAAGGAATTGCTGTGGTTGGGGTGACTACCGTTGGCCAAGTGTTAAAAGCCGTTTTTGGCT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(65-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

86.947

99.779

0.868
  radA Streptococcus pneumoniae D39

86.947

99.779

0.868
  radA Streptococcus pneumoniae R6

86.947

99.779

0.868
  radA Streptococcus pneumoniae TIGR4

86.947

99.779

0.868
  radA Streptococcus mitis NCTC 12261

86.947

99.779

0.868
  radA Streptococcus mitis SK321

86.726

99.779

0.865
  radA Bacillus subtilis subsp. subtilis str. 168

61.05

100

0.616

Multiple sequence alignment