Detailed information NTG1120464

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: EL084_RS08305
• Genome accession: NZ_LR134292
• Coordinates: 1656528..1658969 (-)
• Length: 813 a.a.
• NCBI ID: WP_126440783.1
• Uniprot ID: -
• Organism: Streptococcus equinus strain NCTC10389
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1651528..1663969

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL084_RS08285 (NCTC10389_01741)	-	1652384..1653202 (+)	819	WP_126440779.1	hypothetical protein	-
EL084_RS08290 (NCTC10389_01742)	-	1653221..1654495 (+)	1275	WP_126440781.1	toxic anion resistance protein	-
EL084_RS08295 (NCTC10389_01743)	hslO	1654608..1655474 (+)	867	WP_004233440.1	Hsp33 family molecular chaperone HslO	-
EL084_RS08300 (NCTC10389_01744)	dusB	1655467..1656444 (+)	978	WP_027968310.1	tRNA dihydrouridine synthase DusB	-
EL084_RS08305 (NCTC10389_01745)	clpC	1656528..1658969 (-)	2442	WP_126440783.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
EL084_RS08310 (NCTC10389_01746)	-	1658966..1659427 (-)	462	WP_004233448.1	CtsR family transcriptional regulator	-
EL084_RS08315 (NCTC10389_01747)	-	1659687..1660151 (+)	465	WP_004233451.1	COG2426 family protein	-
EL084_RS08320 (NCTC10389_01748)	tsf	1660491..1661528 (-)	1038	WP_004233454.1	translation elongation factor Ts	-
EL084_RS08325 (NCTC10389_01749)	rpsB	1661635..1662402 (-)	768	WP_044023382.1	30S ribosomal protein S2	-

Sequence

Protein

• Length: 813 a.a.
• Molecular weight: 90214.00 Da
• Isoelectric Point: 6.5810

>NTDB_id=1120464 EL084_RS08305 WP_126440783.1 1656528..1658969(-) (clpC) [Streptococcus equinus strain NCTC10389]
MSEYSMKMQEVFSIAQFQAARFESPYLESWHVLLAMVAVHDSVAGLTFAEYQNKIAYEEYEAAAVLALGKAPLSDVKNVQ
FLEQSKALKDVLAFAESICKVTDGTEIGTEHVLYAMLLNLDLFATRLLEVAGFKNKEDGDSVRLLDLRKSLSRNAGFTKE
KIKAIHDLRKPKKATMGGAFSEMMKPQSTAGELSDFTRDLTELARQGKLEPVIGREKEVSRMVQVLSRKTKNNPVLVGEA
GVGKTALAYGLAQRIVNGEIPYELQDMRVLELDMMSVVAGTRFRGDFEERMNQIISDIEADGHIILFIDEVHTIMGSGSG
IDSTLDAANILKPALARGTLHMVGATTQEEYQKHIEKDAALSRRFAKITIEEPSIEDAYQILLGLKKSYETFHNVIISDE
AVLTAVKAAHRYLTSKNLPDSAIDLLDETSATVQGLVKKKAPEALSDIDKAILEGDFKKATKLLKKSRKVVTRKPAVVTE
DDIMATLSRLSGIPVEKMTQADSKKYLMLEKELHKRVIGQDAAISAISRAIRRNQAGIRTGKRPIGSFMFLGPTGVGKTE
LAKALAELLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLLQV
LDDGVLTDSRGRKVDFSNTIIIMTSNLGATALRDDKTVGFGARDMAHDYDAMQKRIMEELKKAYRPEFINRIDEKVVFHH
LTQENMRDVVKIMVKPLIATLAEKDITLKFQPSALKYLAEAGYDPEMGARPLRRTIQDKVEDKLSELILSGDLASGNTLK
IGVSKGQLKFDIA

Nucleotide

• Length: 2442 bp

>NTDB_id=1120464 EL084_RS08305 WP_126440783.1 1656528..1658969(-) (clpC) [Streptococcus equinus strain NCTC10389]
ATGAGTGAATATTCAATGAAAATGCAGGAGGTTTTCAGCATTGCCCAGTTTCAGGCTGCGCGATTTGAAAGCCCATATTT
AGAAAGTTGGCATGTGCTTTTAGCCATGGTTGCTGTTCATGATTCAGTGGCTGGCTTGACGTTTGCTGAATATCAAAATA
AGATTGCCTATGAAGAGTACGAAGCAGCAGCTGTTTTGGCTCTTGGTAAAGCACCATTGTCAGATGTGAAAAATGTTCAA
TTTTTAGAACAATCAAAGGCTTTAAAAGACGTGTTGGCGTTTGCTGAGTCTATTTGCAAAGTAACTGACGGTACAGAAAT
CGGAACTGAGCACGTGCTTTATGCCATGCTCTTGAATCTTGATTTGTTTGCGACACGTTTGTTAGAAGTTGCTGGATTCA
AAAATAAAGAAGATGGTGACTCAGTTCGCTTGCTTGATTTACGTAAATCATTGTCACGTAATGCTGGATTTACCAAAGAA
AAAATCAAAGCTATCCATGATCTTCGTAAGCCTAAAAAAGCTACAATGGGCGGAGCTTTCTCAGAAATGATGAAGCCTCA
GTCAACTGCGGGAGAATTATCAGACTTCACTCGTGATTTAACTGAATTAGCTCGTCAAGGAAAACTTGAGCCAGTTATCG
GACGTGAAAAAGAAGTCTCTCGCATGGTTCAAGTACTTAGCCGTAAGACTAAAAATAATCCTGTCTTAGTTGGTGAAGCT
GGTGTCGGAAAAACGGCTCTTGCTTATGGTTTGGCACAACGTATTGTCAATGGTGAAATTCCTTATGAACTCCAAGATAT
GCGTGTCTTAGAGCTCGATATGATGAGTGTTGTTGCGGGGACTCGTTTCCGTGGTGATTTCGAAGAACGCATGAACCAAA
TCATCTCAGACATTGAAGCTGATGGTCATATTATTTTGTTTATCGATGAAGTCCACACTATCATGGGTTCTGGTTCAGGT
ATTGATAGTACTTTGGATGCTGCTAATATCTTAAAACCAGCTCTTGCGCGCGGTACACTTCACATGGTTGGTGCGACAAC
ACAAGAAGAATACCAAAAACACATTGAAAAAGATGCTGCGCTTTCTCGTCGTTTTGCGAAAATTACGATTGAAGAGCCAA
GTATTGAAGATGCTTATCAGATTCTTCTTGGACTTAAGAAATCTTATGAAACATTCCACAATGTTATCATTTCTGATGAA
GCTGTGCTGACTGCTGTTAAAGCTGCACACCGCTATTTGACAAGCAAAAATCTTCCAGACTCAGCTATTGATTTGCTTGA
TGAAACGAGTGCAACAGTTCAAGGTCTTGTTAAGAAAAAAGCTCCTGAAGCGTTGTCTGATATTGATAAAGCTATCTTAG
AAGGTGATTTCAAAAAAGCAACGAAATTGCTTAAAAAATCTCGCAAGGTTGTGACACGTAAGCCGGCAGTTGTCACTGAA
GATGACATTATGGCAACTCTTAGCCGTCTGTCAGGTATTCCTGTTGAGAAAATGACACAAGCCGATAGCAAGAAATATTT
GATGCTTGAAAAAGAACTTCACAAACGTGTTATCGGTCAAGATGCTGCGATTTCTGCTATCAGCCGTGCGATTCGCCGTA
ATCAGGCAGGTATTCGCACAGGTAAACGTCCAATTGGTTCTTTCATGTTCTTAGGACCAACTGGGGTTGGTAAGACAGAG
CTTGCTAAAGCTTTGGCAGAACTTCTTTTTGATGATGAATCTGCGCTTATTCGTTTCGATATGTCTGAGTACATGGAAAA
ATTTGCGGCGAGTCGTCTTAACGGAGCGCCTCCAGGATATGTTGGCTATGAAGAAGGTGGAGAACTTACAGAAAAAGTTC
GTAACAAACCTTATTCAGTCCTTCTATTTGATGAGGTTGAAAAAGCTCACCCAGATATTTTCAATGTGCTTCTTCAAGTC
TTGGATGATGGTGTGTTGACAGACAGTCGTGGTCGTAAAGTTGACTTCTCAAACACTATTATTATCATGACGTCAAACCT
TGGTGCGACAGCTCTTCGTGATGATAAAACTGTTGGATTTGGTGCGCGTGATATGGCTCATGACTATGATGCTATGCAAA
AACGTATCATGGAAGAACTTAAGAAAGCTTATCGTCCTGAGTTTATCAACCGTATTGATGAAAAAGTTGTCTTCCACCAT
TTAACACAAGAAAATATGCGCGATGTCGTTAAAATTATGGTTAAACCATTGATTGCAACTTTGGCTGAAAAAGATATCAC
ACTTAAATTCCAACCATCAGCGCTTAAATACCTTGCTGAAGCTGGATATGACCCAGAAATGGGTGCTCGTCCACTTCGCC
GTACTATTCAAGATAAAGTCGAAGATAAACTATCTGAACTTATCCTATCAGGTGATTTGGCAAGCGGAAATACTCTTAAA
ATTGGTGTTTCAAAAGGTCAACTCAAATTTGATATTGCATAA

Domains

Predicted by InterproScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (15-47)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (105-134)

• AAA domain (Cdc48 subfamily) (AAA_2) (543-714)

• AAA lid domain (AAA_lid_9) (374-459)

• ATPase family associated with various cellular activities (AAA) (AAA) (235-367)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (721-800)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus mutans UA159	77.956	99.877	0.779
clpC	Streptococcus thermophilus LMG 18311	73.62	100	0.738
clpC	Streptococcus thermophilus LMD-9	73.497	100	0.737
clpC	Streptococcus pneumoniae TIGR4	68.103	99.877	0.68
clpC	Streptococcus pneumoniae Rx1	68.103	99.877	0.68
clpC	Streptococcus pneumoniae D39	68.103	99.877	0.68
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	49.216	100	0.502
clpC	Bacillus subtilis subsp. subtilis str. 168	43.995	100	0.455