Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EL084_RS08150 Genome accession   NZ_LR134292
Coordinates   1624842..1626203 (-) Length   453 a.a.
NCBI ID   WP_033153501.1    Uniprot ID   A0A6G8HZM5
Organism   Streptococcus equinus strain NCTC10389     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1619842..1631203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL084_RS08130 (NCTC10389_01712) - 1620270..1621436 (-) 1167 WP_126440731.1 CynX/NimT family MFS transporter -
  EL084_RS08135 (NCTC10389_01713) gltX 1621638..1623095 (-) 1458 WP_126440733.1 glutamate--tRNA ligase -
  EL084_RS08140 (NCTC10389_01714) - 1623274..1624200 (-) 927 WP_126440735.1 aldo/keto reductase -
  EL084_RS08145 (NCTC10389_01715) - 1624229..1624726 (-) 498 WP_004233355.1 beta-class carbonic anhydrase -
  EL084_RS08150 (NCTC10389_01716) radA 1624842..1626203 (-) 1362 WP_033153501.1 DNA repair protein RadA Machinery gene
  EL084_RS08155 (NCTC10389_01717) - 1626239..1626685 (-) 447 WP_126440737.1 dUTP diphosphatase -
  EL084_RS08160 (NCTC10389_01718) - 1626712..1627479 (-) 768 WP_126440739.1 epoxyqueuosine reductase QueH -
  EL084_RS08165 (NCTC10389_01719) - 1627680..1628696 (+) 1017 WP_126440741.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  EL084_RS08170 (NCTC10389_01720) galU 1628762..1629676 (+) 915 WP_126440931.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  EL084_RS08175 (NCTC10389_01721) - 1629726..1630397 (-) 672 WP_126440743.1 rhomboid family intramembrane serine protease -
  EL084_RS08180 (NCTC10389_01722) - 1630394..1630921 (-) 528 WP_115255511.1 5-formyltetrahydrofolate cyclo-ligase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49450.86 Da        Isoelectric Point: 6.3749

>NTDB_id=1120463 EL084_RS08150 WP_033153501.1 1624842..1626203(-) (radA) [Streptococcus equinus strain NCTC10389]
MAKKKTTFICQECGYHSPKYLGRCPNCSSWTSFVEEVEVQEVKNARVSLTGEKSKPTKLKDVSSINYSRTKTGMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLAEKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRAQIE
QIQPDFLIIDSIQTIMSPDISGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKVYAPKNSLVGIDMPSSIEVVGVTTVGEVLKKVFK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1120463 EL084_RS08150 WP_033153501.1 1624842..1626203(-) (radA) [Streptococcus equinus strain NCTC10389]
ATCGCTAAGAAGAAAACAACGTTTATTTGTCAGGAGTGCGGCTATCATTCTCCTAAATATCTAGGACGTTGTCCAAATTG
TTCATCTTGGACATCTTTTGTTGAAGAAGTCGAAGTACAAGAGGTTAAAAATGCGCGTGTCAGTTTGACAGGTGAAAAGA
GCAAACCAACTAAGTTGAAGGACGTTAGCTCGATTAATTATTCACGCACAAAGACTGGCATGGATGAATTTAACCGCGTG
CTTGGTGGCGGTGTGGTGCCAGGCAGTTTGGTGCTTATCGGTGGTGACCCAGGTATCGGAAAATCAACCTTGCTTTTGCA
AGTATCAATTCAGCTGGCAGAGAAAGGAACGGTTCTTTACGTTTCTGGGGAAGAATCAGCTGAGCAGATTAAACTACGTA
GTGAACGTCTTGGCGACATTGATAATGAATTTTACCTTTATGCTGAGACAAATATGCAAGCTATCCGTGCGCAGATTGAG
CAAATCCAGCCTGATTTCTTAATTATTGACTCGATTCAAACGATTATGAGTCCTGATATTTCAGGAGTCCAAGGTTCGGT
ATCTCAAGTGCGCGAAGTGACGGCAGAGCTCATGCAGTTAGCTAAGACTAATAACATCGCAACCTTTATCGTTGGTCACG
TGACTAAGGAAGGACAGCTTGCTGGTCCGCGTATGCTTGAGCATATGGTGGATACGGTGCTTTATTTTGAGGGTGAACGC
CATCATACCTTCCGTATCTTGCGTGCAGTGAAAAACCGTTTTGGTTCAACTAACGAAATCGGCATTTTTGAAATGCAATC
TGGTGGGCTGGTTGAAGTGCTTAATCCGAGCCAAGTTTTCTTGGAAGAACGCTTGGATGGCGCGACTGGTTCAGCTATCG
TGGTAACCATGGAAGGTAGTCGTCCGATTTTGGCGGAGGTTCAAGCTTTGGTGACACCGACTGTTTTTGGAAATGCCAAA
CGCACAACGACTGGGCTTGATTTCAATCGCGTTAGTCTGATTATGGCGGTACTTGAAAAACGTTGTGGGCTTTTATTGCA
AAATCAAGATGCTTATCTCAAATCTGCTGGTGGTGTCAAACTTGATGAGCCAGCGATTGACTTGGCAGTAGCGGTAGCTA
TTGCGTCAAGCTACAAAGAGAAGCCGACAAATCCACAAGAAGCTTTTATCGGTGAAATTGGTTTGACAGGTGAAATTCGT
CGCGTCACTCGTATTGAACAACGTATCAATGAAGCAGCTAAGCTTGGCTTTACAAAAGTTTACGCACCGAAAAATTCTTT
AGTTGGTATTGATATGCCATCATCTATTGAAGTTGTTGGTGTGACAACTGTTGGAGAAGTTCTTAAGAAAGTTTTTAAAT
AG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8HZM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.496

99.779

0.883
  radA Streptococcus pneumoniae D39

88.496

99.779

0.883
  radA Streptococcus pneumoniae R6

88.496

99.779

0.883
  radA Streptococcus pneumoniae TIGR4

88.496

99.779

0.883
  radA Streptococcus mitis SK321

88.496

99.779

0.883
  radA Streptococcus mitis NCTC 12261

88.274

99.779

0.881
  radA Bacillus subtilis subsp. subtilis str. 168

62.031

100

0.62

Multiple sequence alignment