Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EL092_RS00875 Genome accession   NZ_LR134291
Coordinates   181301..182668 (+) Length   455 a.a.
NCBI ID   WP_075202780.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC7868     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 176301..187668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL092_RS00840 (NCTC7868_00166) - 176960..178729 (+) 1770 WP_011999708.1 ABC transporter ATP-binding protein -
  EL092_RS00845 (NCTC7868_00167) - 178908..179597 (+) 690 WP_011999709.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  EL092_RS00855 (NCTC7868_00168) - 179856..180305 (+) 450 WP_011999710.1 8-oxo-dGTP diphosphatase -
  EL092_RS00865 (NCTC7868_00169) - 180390..180833 (+) 444 WP_011999711.1 dUTP diphosphatase -
  EL092_RS00870 (NCTC7868_00170) - 180843..181310 (+) 468 WP_011999712.1 isochorismatase family protein -
  EL092_RS00875 (NCTC7868_00171) radA 181301..182668 (+) 1368 WP_075202780.1 DNA repair protein RadA Machinery gene
  EL092_RS00880 (NCTC7868_00172) - 182781..183491 (+) 711 WP_011999714.1 TIGR00266 family protein -
  EL092_RS00885 (NCTC7868_00173) - 183627..184121 (+) 495 WP_008808198.1 beta-class carbonic anhydrase -
  EL092_RS00890 (NCTC7868_00174) gltX 184271..185728 (+) 1458 WP_011999715.1 glutamate--tRNA ligase -
  EL092_RS00895 (NCTC7868_00175) - 185904..187103 (+) 1200 WP_011999716.1 argininosuccinate synthase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49758.14 Da        Isoelectric Point: 5.7873

>NTDB_id=1120339 EL092_RS00875 WP_075202780.1 181301..182668(+) (radA) [Streptococcus gordonii strain NCTC7868]
MIIAKKKTTFVCQNCEYHSPKYLGRCPNCGAWSSFVEEVEAAEVKHARVSLTGEKTRPMKLAEVTSIDVNRTKTEMDEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSHQGTVLYVSGEESAEQIKLRAERLGDIDSEFYLYAETNMQNIRTE
IEKIKPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVVNPSEVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLNGLKVPDNIQVIGVTTIGEVLKKVFS

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1120339 EL092_RS00875 WP_075202780.1 181301..182668(+) (radA) [Streptococcus gordonii strain NCTC7868]
ATTATTATAGCTAAGAAAAAAACGACCTTTGTCTGTCAAAATTGTGAATACCATTCGCCCAAGTATCTGGGTCGCTGTCC
TAATTGTGGAGCTTGGTCTTCTTTTGTTGAGGAAGTAGAGGCTGCAGAAGTCAAGCATGCCCGTGTTTCCTTGACAGGTG
AAAAGACTCGGCCCATGAAGCTAGCTGAGGTCACTTCGATTGATGTCAATCGGACCAAGACGGAAATGGACGAGTTCAAC
CGTGTGCTGGGTGGTGGAGTCGTGCCTGGCAGTCTGGTTCTGATTGGTGGAGATCCTGGTATCGGGAAGTCCACCCTGCT
ATTGCAGGTGTCCACTCAGCTTTCTCATCAGGGCACCGTTCTTTATGTCAGCGGGGAGGAATCAGCTGAGCAGATTAAGC
TGCGGGCGGAGCGGCTCGGTGATATTGATAGTGAATTTTATCTCTACGCCGAGACCAATATGCAAAATATCCGCACGGAG
ATTGAGAAAATCAAGCCAGATTTTCTGATTATTGACTCCATTCAGACAGTTATGTCGCCGGAAATTTCCAGTGTTCAAGG
CTCTGTTTCTCAGGTCCGAGAGGTGACAGCTGAGCTCATGCAGCTGGCTAAGACCAATAATATCGCGACCTTTATCGTTG
GCCACATGACCAAGGAAGGAACCTTAGCTGGCCCCCGAACTTTGGAGCACATGGTGGATACCGTGCTTTATTTTGAGGGC
GAACGCCAGCACACTTTCCGCATTTTACGGGCAGTTAAAAACCGCTTTGGCTCTACCAATGAGATTGGCATTTTTGAGAT
GCAGTCTGGTGGGCTAGTTGAGGTTGTCAATCCCAGTGAAGTCTTTCTAGAAGAGCGTCTGGATGGTGCGACAGGTTCTT
CCATCGTCGTGACCATGGAAGGGACGCGGCCGATTTTAGCAGAGGTACAGGCTTTGGTGACACCGACCATGTTCGGCAAT
GCCAAGCGGACCACGACTGGACTGGACTTTAACCGAGCCAGCCTCATCATGGCAGTTCTGGAAAAGAGGGCGGGGCTCCT
TCTGCAAAATCAAGACGCCTACCTCAAATCAGCTGGTGGTGTCAAGCTAGATGAACCGGCTATTGATTTGGCGGTAGCGG
TAGCCATTGCCTCCAGCTACAAAGATTTGCCTACCAATCCTCAAGAGTGCTTTATCGGTGAAATTGGCCTGACTGGTGAA
ATCCGTCGGGTTAATCGCATCGAGCAGCGCATCAACGAAGCAGCAAAGCTGGGCTTCACCAAAGTCTACGCTCCTAAAAA
CTCTCTGAACGGTCTCAAAGTTCCAGACAATATCCAAGTCATCGGTGTGACGACGATTGGGGAAGTCTTAAAGAAAGTAT
TTTCTTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(63-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

Subunit ChlI of Mg-chelatase (ChlI)

(362-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.391

99.56

0.91
  radA Streptococcus pneumoniae Rx1

91.17

99.56

0.908
  radA Streptococcus pneumoniae D39

91.17

99.56

0.908
  radA Streptococcus pneumoniae R6

91.17

99.56

0.908
  radA Streptococcus pneumoniae TIGR4

91.17

99.56

0.908
  radA Streptococcus mitis SK321

91.17

99.56

0.908
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.56

0.624

Multiple sequence alignment