Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   EL087_RS02120 Genome accession   NZ_LR134288
Coordinates   419692..420402 (-) Length   236 a.a.
NCBI ID   WP_126406580.1    Uniprot ID   A0A4U9YDV0
Organism   Streptococcus milleri strain NCTC11169     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 414692..425402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL087_RS02105 (NCTC11169_00422) - 415094..416218 (+) 1125 WP_106384591.1 AI-2E family transporter -
  EL087_RS02110 (NCTC11169_00423) - 416440..418086 (+) 1647 WP_126406574.1 phosphoenolpyruvate carboxykinase (ATP) -
  EL087_RS02115 (NCTC11169_00424) - 418200..419540 (+) 1341 WP_126406577.1 hemolysin family protein -
  EL087_RS02120 (NCTC11169_00425) treR 419692..420402 (-) 711 WP_126406580.1 trehalose operon repressor Regulator
  EL087_RS02125 (NCTC11169_00426) treP 420582..422594 (+) 2013 WP_126408113.1 PTS system trehalose-specific EIIBC component -
  EL087_RS02130 (NCTC11169_00427) treC 422801..424432 (+) 1632 WP_126406583.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27565.61 Da        Isoelectric Point: 9.2637

>NTDB_id=1120250 EL087_RS02120 WP_126406580.1 419692..420402(-) (treR) [Streptococcus milleri strain NCTC11169]
MKKYEQIFKLLEQDILNEKYQINDYLPSEHELVQTYKVSRDTIRKSLDLLQKAGLIQKMRGQGSKVIQQEQIDFPVSNLT
SYQELVRQHGMNSKTNVIQLEKITVDKKLSSLTGFPEYRLVWRIIRQRVVDGIASVLDIDYLDKSFVPSISREIAEHSIY
AYLEDELGLHIAYAQKEITIDPATNRDKILMSIGNDHHVVSVKSKVYLADGQQFQFTDSRHKLEKFRFVDFAKRQK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1120250 EL087_RS02120 WP_126406580.1 419692..420402(-) (treR) [Streptococcus milleri strain NCTC11169]
ATGAAAAAATATGAACAAATTTTTAAACTCTTAGAACAAGATATTCTAAACGAGAAATATCAGATAAATGATTATCTTCC
TAGCGAACACGAACTTGTCCAGACCTACAAGGTCAGCCGTGACACGATTCGTAAATCGCTTGATTTGCTTCAAAAAGCTG
GTCTCATTCAAAAAATGAGAGGTCAAGGCTCTAAAGTCATCCAACAAGAACAGATTGACTTTCCCGTTTCCAACCTAACT
AGTTACCAAGAACTTGTTCGGCAACATGGAATGAATTCTAAAACCAATGTCATCCAGTTAGAAAAAATTACAGTTGATAA
AAAATTATCCAGTCTTACTGGTTTTCCTGAATATCGTCTGGTGTGGCGGATTATTCGCCAAAGGGTCGTTGACGGGATTG
CCTCCGTCTTAGATATTGATTACCTTGATAAGAGTTTTGTCCCTTCTATTAGCCGTGAAATTGCAGAGCATTCAATTTAT
GCTTATTTAGAAGATGAACTGGGGCTACACATTGCTTACGCCCAAAAAGAAATCACAATTGATCCAGCTACCAATCGCGA
TAAAATATTGATGAGCATTGGAAATGACCACCATGTCGTCTCTGTCAAATCAAAAGTCTATCTCGCAGACGGACAGCAAT
TTCAGTTTACAGATAGTCGTCATAAACTCGAAAAATTCCGTTTCGTTGATTTTGCCAAGCGGCAAAAATGA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(89-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U9YDV0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

65.254

100

0.653

Multiple sequence alignment