Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   EL111_RS06155 Genome accession   NZ_LR134287
Coordinates   1313091..1314857 (-) Length   588 a.a.
NCBI ID   WP_123795332.1    Uniprot ID   A0A5P3MTC8
Organism   Neisseria animalis strain NCTC10212     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1308091..1319857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL111_RS06135 (NCTC10212_01270) tilS 1308180..1309475 (-) 1296 WP_123795328.1 tRNA lysidine(34) synthetase TilS -
  EL111_RS06140 (NCTC10212_01271) - 1309807..1310766 (-) 960 WP_123795329.1 acetyl-CoA carboxylase carboxyltransferase subunit alpha -
  EL111_RS06145 (NCTC10212_01272) - 1310978..1311382 (+) 405 WP_123795330.1 RNA-binding S4 domain-containing protein -
  EL111_RS06150 (NCTC10212_01273) - 1311620..1312804 (-) 1185 WP_123795331.1 hypothetical protein -
  EL111_RS06155 (NCTC10212_01274) recD 1313091..1314857 (-) 1767 WP_123795332.1 exodeoxyribonuclease V subunit alpha Machinery gene
  EL111_RS06160 (NCTC10212_01275) lolD 1315007..1315705 (-) 699 WP_123795333.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  EL111_RS06165 (NCTC10212_01276) - 1315698..1316948 (-) 1251 WP_123795334.1 lipoprotein-releasing ABC transporter permease subunit -
  EL111_RS06170 (NCTC10212_01277) - 1317169..1317456 (+) 288 WP_123795335.1 hypothetical protein -
  EL111_RS06175 (NCTC10212_01278) - 1317825..1318244 (-) 420 WP_123795336.1 YidB family protein -
  EL111_RS06180 (NCTC10212_01280) ruvX 1318731..1319204 (-) 474 WP_123795337.1 Holliday junction resolvase RuvX -
  EL111_RS06185 (NCTC10212_01281) - 1319197..1319745 (-) 549 WP_123795452.1 YqgE/AlgH family protein -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 63801.76 Da        Isoelectric Point: 6.4065

>NTDB_id=1120213 EL111_RS06155 WP_123795332.1 1313091..1314857(-) (recD) [Neisseria animalis strain NCTC10212]
MTPTPVSDLNHSAAFATTVFLSRFAPEEAKIVQPYIEQLFGALQNGHSFIRLNDAQAAELQQAGKIVGGSGNTPLVLQGR
RLFLGRLWQLEHDLAKEIKRLATAETEAVDWLQAAQNLADWFGSAGSNGQRDAAALALLQPFMLITGGPGTGKTTTVAKL
LGLICANSRSSLPRISLAAPTGKAAAHMAKALHRALDGFALADGIKRHLQQLEGQTVHRLLKLRPPQMLPAFDKHSPLPL
DILVVDEASMLDISLLLQLLRALPDGCRVIFLGDPYQLPSVGVGAVLSALVQPTILDGKTHQELSGYLPQHGFTVSEDAP
PLSKNTAHLSVSHRFGADSGIGCLARAVLAGEAEEAWAQFARFPDDLELGSGTFGQQAVKLYGLHEAYWQAVDKGDVALA
YGHAADVVVLTAWRQDAEAFNQAYTDYLRRQARANGVLPYFAGQIIMISRNDYTLDLFNGDIGLIMPSAKQQDTLAAYFP
IADGFKEVAISRLPEFETAFAMTVHKSQGSEYREVWLLPPSVPQNTESEAEGDALAGLNNALLYTGITRARNRFVFWGGQ
SELVAAVHTRKKRQTALKEMLEAVFRED

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=1120213 EL111_RS06155 WP_123795332.1 1313091..1314857(-) (recD) [Neisseria animalis strain NCTC10212]
ATGACTCCAACCCCCGTTTCCGATTTGAATCATTCTGCTGCATTTGCTACTACGGTGTTTTTATCACGATTTGCGCCCGA
AGAGGCAAAAATCGTGCAACCCTATATAGAACAACTGTTTGGCGCGTTGCAAAACGGACATTCGTTTATCCGCTTGAATG
ACGCGCAAGCAGCCGAATTGCAACAGGCCGGGAAAATTGTCGGCGGCAGCGGCAATACGCCTTTGGTGCTTCAAGGGCGG
AGGCTGTTTTTAGGGCGGCTGTGGCAGCTTGAGCATGATTTGGCAAAAGAAATCAAGCGATTGGCTACGGCAGAAACCGA
GGCGGTGGATTGGTTGCAGGCCGCACAGAATTTGGCAGACTGGTTCGGCAGTGCAGGCAGCAACGGGCAGCGGGACGCGG
CGGCCTTGGCATTGCTCCAGCCGTTTATGTTGATTACCGGCGGACCGGGTACGGGCAAAACCACCACCGTTGCCAAGCTG
CTGGGCTTGATTTGTGCCAACAGCCGAAGCTCTCTGCCCCGGATTTCATTGGCCGCACCCACGGGAAAAGCAGCAGCCCA
CATGGCAAAAGCCCTGCACCGCGCTTTGGACGGCTTCGCCCTTGCAGACGGCATCAAACGGCACTTGCAGCAGTTGGAAG
GGCAAACCGTACACCGTTTGCTGAAACTGCGCCCACCGCAAATGCTGCCCGCGTTTGATAAACATTCGCCGTTGCCGTTG
GATATTTTAGTGGTTGACGAAGCCTCCATGTTGGATATTTCCCTGCTGTTGCAACTGCTGCGTGCGCTGCCGGACGGCTG
CCGGGTCATTTTTCTCGGTGACCCTTACCAACTGCCGTCGGTAGGAGTGGGGGCAGTATTGTCGGCATTGGTGCAACCCA
CGATCTTGGACGGCAAAACCCATCAGGAATTGAGCGGTTATCTTCCGCAACACGGTTTTACCGTCAGCGAAGACGCGCCG
CCGTTGTCAAAAAATACCGCGCATTTGAGCGTCAGCCACCGTTTTGGAGCCGACAGCGGTATCGGCTGTCTGGCAAGGGC
GGTGTTGGCGGGAGAGGCTGAAGAGGCTTGGGCACAGTTTGCGCGCTTTCCCGATGATTTGGAACTCGGCTCGGGAACCT
TCGGGCAGCAGGCAGTCAAGCTCTACGGCCTGCATGAAGCCTATTGGCAGGCCGTGGATAAAGGAGATGTCGCGTTGGCT
TACGGACACGCCGCCGATGTGGTAGTACTGACGGCATGGCGGCAGGATGCGGAAGCATTCAATCAGGCATATACCGATTA
TTTGCGGCGGCAGGCGCGTGCCAACGGTGTTTTGCCTTATTTTGCCGGACAAATCATCATGATTTCCCGCAACGATTACA
CGCTGGATTTATTTAACGGCGATATTGGTTTGATTATGCCGTCTGCAAAACAGCAGGATACCTTGGCCGCCTATTTTCCG
ATTGCAGACGGCTTTAAAGAAGTGGCCATCAGCCGTTTGCCCGAATTTGAAACCGCATTCGCCATGACGGTACACAAGAG
CCAAGGTTCGGAATATCGAGAAGTCTGGCTGTTGCCGCCGAGCGTACCGCAAAACACGGAATCGGAAGCAGAGGGCGACG
CGCTTGCCGGCTTGAACAATGCCCTGTTGTACACCGGCATTACCCGCGCCCGCAACCGCTTTGTGTTTTGGGGCGGGCAG
AGCGAGCTGGTTGCGGCAGTCCATACCCGCAAAAAACGCCAAACCGCGCTGAAAGAAATGTTGGAGGCTGTATTTCGGGA
AGATTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(499-553)

AAA domain (AAA_30)

(127-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P3MTC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

62.39

96.769

0.604

Multiple sequence alignment