Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   EL111_RS00755 Genome accession   NZ_LR134287
Coordinates   164695..166338 (+) Length   547 a.a.
NCBI ID   WP_162843003.1    Uniprot ID   -
Organism   Neisseria animalis strain NCTC10212     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 159695..171338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL111_RS00740 - 159791..160030 (-) 240 WP_123796188.1 hypothetical protein -
  EL111_RS00745 (NCTC10212_00148) murA 160147..161400 (+) 1254 WP_123796187.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  EL111_RS00750 (NCTC10212_00149) mutS 161941..164538 (-) 2598 WP_123796186.1 DNA mismatch repair protein MutS -
  EL111_RS00755 (NCTC10212_00150) pilA 164695..166338 (+) 1644 WP_162843003.1 signal recognition particle-docking protein FtsY Machinery gene
  EL111_RS00760 (NCTC10212_00151) - 166553..167008 (+) 456 WP_123796185.1 DMT family transporter -
  EL111_RS00765 (NCTC10212_00152) - 167302..168351 (-) 1050 WP_123796184.1 LLM class flavin-dependent oxidoreductase -
  EL111_RS00770 (NCTC10212_00153) - 168552..169730 (-) 1179 WP_123796183.1 phosphoglycerate kinase -
  EL111_RS00775 (NCTC10212_00154) - 169850..170488 (-) 639 WP_123796182.1 TIGR01621 family pseudouridine synthase -
  EL111_RS00780 (NCTC10212_00155) - 170503..171075 (-) 573 WP_123796207.1 TMEM165/GDT1 family protein -

Sequence

Protein


Download         Length: 547 a.a.        Molecular weight: 57215.65 Da        Isoelectric Point: 4.1201

>NTDB_id=1120195 EL111_RS00755 WP_162843003.1 164695..166338(+) (pilA) [Neisseria animalis strain NCTC10212]
MAFFDFFRRKKKDNEQETETAASVETTEAAAGEAEQPSEAAADAAVAEETLGQPLGVQAAQTAAVSESKTGRTAETAENA
VDMPSEVSDGIADTETEAESADRAAENTVQADGETGVETAADSTGAVMMPSASAEAASAETLESVEAEKEVAEVRAGEET
ETVKAAEEAVAEQPSENRAESPAAEAVEPETADTASAPVQQPATNEAYGEETENNGIGAEQPPAETLPAAVMETAPEAEP
EAVSKPGWAARLKQGLSKSRDKMAKSLAGVFGGGKIDEDLYEELETVLITSDMGMEATEYLMKDVRNRVSLKGLKDGAEL
RGALKEAVYDLIKPLEQPLVLPESKEPFVIMLAGINGAGKTTSIGKLAKYFQSQGKSVLLAAGDTFRAAAREQLQEWGGR
NGVTVISQSTGDSAAVCFDAVQAAKARGIDVVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNA
VNQVKAFDDALGLTGLIVTKLDGTAKGGILAALAGNRPIPVRYIGVGEGIDDLRPFDARGFVDALLD

Nucleotide


Download         Length: 1644 bp        

>NTDB_id=1120195 EL111_RS00755 WP_162843003.1 164695..166338(+) (pilA) [Neisseria animalis strain NCTC10212]
ATGGCCTTTTTTGATTTTTTCCGCCGTAAGAAAAAAGACAATGAGCAAGAAACCGAAACCGCCGCATCTGTAGAAACCAC
AGAAGCGGCAGCAGGGGAGGCAGAGCAGCCGTCTGAAGCGGCGGCTGATGCTGCCGTGGCAGAGGAAACGCTTGGGCAGC
CGCTTGGAGTGCAGGCAGCGCAAACGGCTGCGGTGTCGGAAAGCAAAACCGGACGCACGGCAGAAACGGCTGAAAACGCC
GTTGACATGCCGTCTGAAGTTTCAGACGGCATAGCGGATACGGAAACCGAGGCGGAGTCGGCTGACAGGGCGGCGGAAAA
TACCGTGCAGGCAGACGGGGAAACGGGCGTGGAAACCGCTGCGGACAGTACCGGAGCGGTCATGATGCCGTCTGCAAGTG
CGGAAGCGGCAAGCGCAGAAACGCTTGAATCTGTCGAAGCAGAAAAAGAGGTTGCGGAAGTTCGGGCGGGGGAAGAAACG
GAAACCGTCAAAGCGGCGGAAGAAGCCGTTGCAGAGCAGCCGTCTGAAAATCGGGCGGAAAGCCCGGCAGCCGAAGCAGT
TGAGCCGGAAACAGCAGACACCGCATCTGCCCCCGTGCAGCAGCCTGCAACAAATGAAGCATACGGCGAAGAGACGGAAA
ACAACGGTATCGGGGCGGAACAGCCGCCTGCAGAAACCCTGCCCGCTGCCGTGATGGAGACCGCACCTGAAGCAGAACCC
GAAGCCGTATCCAAACCCGGCTGGGCGGCGCGTTTGAAACAAGGTTTGAGCAAGTCCCGCGACAAAATGGCGAAATCGCT
GGCGGGCGTATTCGGCGGCGGTAAAATCGATGAAGATTTGTATGAGGAGCTGGAAACCGTATTAATTACCAGCGACATGG
GCATGGAAGCGACCGAATATCTGATGAAAGACGTACGCAACCGTGTATCGCTCAAAGGCTTGAAAGACGGCGCGGAATTG
CGCGGCGCATTGAAAGAGGCGGTTTACGACCTCATCAAGCCGTTGGAACAGCCGCTGGTGTTGCCCGAAAGTAAAGAGCC
GTTTGTGATTATGCTGGCGGGTATCAACGGCGCGGGCAAAACCACTTCCATCGGCAAGCTGGCCAAATATTTCCAATCGC
AAGGCAAATCCGTGTTGCTGGCGGCGGGCGATACCTTCCGTGCGGCGGCACGCGAGCAGTTGCAGGAATGGGGCGGGCGC
AACGGCGTTACCGTAATTTCCCAATCCACAGGCGATTCTGCCGCGGTGTGTTTCGATGCCGTGCAGGCCGCCAAAGCACG
CGGTATCGATGTGGTGCTGGCGGATACTGCCGGACGGCTGCCGACCCAGCTTCACCTGATGGAAGAAATCAAAAAAGTGA
AGCGCGTATTGCAAAAAGCCATGCCGGACGCGCCGCACGAAATCATTGTGGTACTCGATGCCAATATCGGCCAAAATGCC
GTCAACCAAGTTAAGGCCTTCGACGATGCGCTGGGACTGACCGGCCTGATTGTGACCAAACTCGACGGCACGGCCAAGGG
CGGCATTCTGGCGGCATTGGCGGGCAACCGGCCGATTCCCGTGCGCTACATCGGCGTGGGCGAAGGCATCGACGATTTGC
GCCCGTTTGACGCACGCGGGTTTGTAGATGCGTTGTTGGATTGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(262-327)

SRP54-type protein, GTPase domain (SRP54)

(347-546)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

76.485

76.965

0.589

Multiple sequence alignment