Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpE   Type   Regulator
Locus tag   EL079_RS00755 Genome accession   NZ_LR134283
Coordinates   143843..146128 (-) Length   761 a.a.
NCBI ID   WP_003031274.1    Uniprot ID   A0A3S4QL01
Organism   Streptococcus anginosus strain NCTC10713     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context


Location: 138843..151128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL079_RS00735 (NCTC10713_00157) - 140788..141087 (-) 300 WP_003023675.1 DUF1827 family protein -
  EL079_RS00740 (NCTC10713_00158) - 141151..141600 (-) 450 WP_003031294.1 NUDIX hydrolase -
  EL079_RS00745 (NCTC10713_00159) - 141676..142800 (-) 1125 WP_003031278.1 PTS sugar transporter subunit IIC -
  EL079_RS00750 - 143191..143795 (+) 605 Protein_136 GyrI-like domain-containing protein -
  EL079_RS00755 (NCTC10713_00162) clpE 143843..146128 (-) 2286 WP_003031274.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  EL079_RS00760 (NCTC10713_00163) - 146367..146597 (+) 231 WP_003023686.1 DUF1797 family protein -
  EL079_RS00765 (NCTC10713_00164) - 146763..147239 (+) 477 WP_003031292.1 FeoA family protein -
  EL079_RS00770 (NCTC10713_00165) feoB 147236..149380 (+) 2145 WP_003031281.1 ferrous iron transport protein B -
  EL079_RS00775 (NCTC10713_00166) - 149389..149523 (+) 135 WP_003031275.1 FeoB-associated Cys-rich membrane protein -
  EL079_RS00780 (NCTC10713_00167) - 149599..150141 (+) 543 WP_018543567.1 ClbS/DfsB family four-helix bundle protein -
  EL079_RS00785 - 150236..150481 (+) 246 WP_223349563.1 hypothetical protein -

Sequence


Protein


Download         Length: 761 a.a.        Molecular weight: 84778.93 Da        Isoelectric Point: 4.9877

>NTDB_id=1120008 EL079_RS00755 WP_003031274.1 143843..146128(-) (clpE) [Streptococcus anginosus strain NCTC10713]
MLCQNCKINESTIHLYTNVNGKQHQVDLCQNCYQIMKTDPNNALFRGMTNMNNQNNLDPFDDFFNNLGNFQNHQEPQTPP
TQSGGGYGNGGYGSNQGGGARQQTPQQPKGLLEEFGINVTEFARRGEIDPVIGRDEEIVRVIEILNRRTKNNPVLIGEPG
VGKTAVVEGLAQKIVDGDVPHKLQGKEVIRLDVVSLVQGTGIRGQFEERMQKLMEEIRSRQDVILFIDEIHEIVGAGAAG
DGNMDAGNILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPTVEETITILKGIQKKYEDYHHVKYTDDAI
EAAAVLSNRYIQDRFLPDKAIDLLDEAGSKMNLTLNFVDPKVIDQRLVEAENLKAQATRDEDFEKAAYFRDQIAKYKEMQ
QNKMADQDTPIISEKTIEHIIEQKTNIPVGDLKEKEQSQLISLADDLKAHVIGQDDAVDKIAKAIRRNRVGLGSPNRPIG
SFLFVGPTGVGKTELSKQLAIELFGSADSMIRFDMSEYMEKHSVAKLVGAPPGYVGYEEAGQLTERVRRNPYSLILLDEV
EKAHPDVMHMFLQVLDDGRLTDGQGRTVSFKDTIIIMTSNAGTGKVEANVGFGAAREGRTNSVLGELGNFFSPEFMNRFD
GIIEFKSLSKENLLQIVDLMLEDVNKRLAVNGIHLDVTDKVKEKLVNLGYDPKMGARPLRRTIQDHIEDAITDYYLEHPS
EKELKAVMTSNSKIVIKSASAKKSENEADKEIKTTADDNAD

Nucleotide


Download         Length: 2286 bp        

>NTDB_id=1120008 EL079_RS00755 WP_003031274.1 143843..146128(-) (clpE) [Streptococcus anginosus strain NCTC10713]
ATGCTTTGTCAAAATTGTAAAATAAATGAATCAACCATTCACCTTTACACAAATGTGAATGGAAAACAACACCAAGTTGA
CCTCTGTCAAAATTGTTATCAAATCATGAAAACAGACCCCAATAATGCTCTGTTTCGTGGAATGACCAATATGAATAATC
AAAACAACTTAGACCCGTTTGATGATTTCTTTAATAATCTTGGAAATTTCCAAAATCATCAAGAACCGCAGACCCCTCCT
ACTCAATCAGGTGGTGGTTACGGCAATGGAGGTTACGGTTCCAATCAAGGTGGGGGTGCACGCCAGCAAACTCCGCAACA
GCCAAAAGGACTCCTAGAAGAATTTGGCATCAATGTAACCGAATTTGCTCGGCGCGGTGAAATTGACCCTGTCATCGGTC
GTGATGAGGAAATCGTCCGCGTCATTGAAATTCTCAACCGTCGAACAAAGAACAATCCAGTCCTCATCGGAGAGCCCGGT
GTCGGTAAAACAGCTGTTGTAGAAGGCTTGGCACAGAAGATTGTGGACGGTGATGTTCCACATAAACTTCAAGGAAAAGA
AGTCATCCGTTTAGATGTAGTCAGCCTAGTGCAAGGAACTGGTATCCGCGGTCAATTTGAAGAACGAATGCAAAAACTCA
TGGAGGAAATCCGTTCTCGTCAGGATGTGATTCTATTCATTGATGAAATCCATGAAATCGTTGGAGCTGGTGCAGCTGGA
GATGGGAATATGGATGCTGGTAACATCTTAAAACCTGCTCTTGCTCGCGGCGAGCTTCAATTAGTTGGTGCCACAACTCT
CAATGAGTATCGCATTATCGAAAAAGATGCAGCACTGGAACGCCGGATGCAGCCAGTAAAAGTGGATGAACCAACGGTTG
AAGAAACCATTACTATTCTAAAAGGCATTCAAAAAAAATACGAAGACTATCACCACGTCAAATACACAGACGATGCCATT
GAAGCAGCGGCTGTCTTGTCCAATCGTTATATCCAAGATCGCTTCTTGCCCGATAAGGCCATTGACTTGCTAGACGAAGC
AGGCTCTAAGATGAATCTGACACTTAACTTTGTCGATCCAAAAGTCATTGATCAACGATTGGTAGAAGCTGAAAACCTCA
AGGCACAAGCTACTCGTGATGAAGATTTTGAAAAAGCTGCTTATTTCCGTGACCAAATTGCCAAATACAAAGAAATGCAG
CAAAATAAAATGGCAGACCAAGATACACCTATCATCAGTGAAAAAACGATTGAGCATATCATTGAGCAAAAAACAAATAT
CCCAGTTGGTGACTTAAAAGAAAAGGAACAATCGCAATTAATTAGTCTGGCTGATGATTTGAAAGCTCATGTCATCGGTC
AAGATGATGCCGTTGATAAAATTGCCAAAGCCATTCGCCGTAATCGTGTCGGACTTGGCTCTCCTAATCGACCAATTGGA
TCCTTCCTCTTTGTCGGACCAACCGGTGTCGGTAAAACAGAACTTTCTAAACAATTAGCCATTGAACTCTTTGGCTCAGC
TGACAGCATGATTCGCTTTGATATGAGTGAATATATGGAAAAACACAGCGTAGCCAAACTCGTTGGAGCACCTCCAGGCT
ATGTTGGCTACGAAGAAGCCGGACAATTGACAGAACGCGTACGCCGCAATCCTTATTCTCTCATTCTGCTTGACGAAGTA
GAAAAAGCGCACCCAGATGTCATGCACATGTTCCTGCAAGTTCTTGACGATGGACGTCTGACAGACGGACAAGGGCGCAC
AGTTAGCTTTAAAGATACAATTATCATCATGACTTCCAACGCCGGTACTGGAAAAGTCGAAGCAAACGTTGGATTTGGTG
CAGCGCGTGAAGGACGAACTAATTCCGTCCTCGGTGAATTGGGCAACTTCTTCAGCCCAGAATTTATGAATCGTTTCGAT
GGTATTATTGAGTTCAAATCTCTTAGCAAGGAAAATCTCCTACAAATCGTAGATTTGATGCTTGAAGATGTGAATAAACG
CTTAGCTGTAAATGGTATTCACCTAGACGTAACAGACAAAGTCAAGGAAAAATTAGTTAATCTTGGTTACGATCCAAAAA
TGGGAGCTCGTCCACTTCGTCGGACAATCCAAGATCACATCGAGGATGCTATCACCGACTACTATCTTGAACATCCAAGC
GAAAAAGAGCTCAAAGCTGTCATGACAAGCAACAGCAAGATTGTTATCAAATCAGCTTCAGCTAAAAAATCTGAAAACGA
AGCTGACAAAGAAATCAAAACAACAGCAGATGACAATGCTGATTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A3S4QL01

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus pneumoniae Rx1

87.367

98.817

0.863

  clpE Streptococcus pneumoniae D39

87.367

98.817

0.863

  clpE Streptococcus pneumoniae R6

87.367

98.817

0.863

  clpE Streptococcus pneumoniae TIGR4

87.234

98.817

0.862

  clpE Streptococcus mutans UA159

84.231

100

0.842

  clpC Lactococcus lactis subsp. cremoris KW2

76.548

99.737

0.763

  clpC Bacillus subtilis subsp. subtilis str. 168

51.118

88.173

0.451

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

47.853

85.677

0.41

  clpC Streptococcus pneumoniae Rx1

48.47

81.603

0.396

  clpC Streptococcus pneumoniae D39

48.47

81.603

0.396

  clpC Streptococcus pneumoniae TIGR4

48.309

81.603

0.394

  clpC Streptococcus mutans UA159

47.276

81.997

0.388

  clpC Streptococcus thermophilus LMD-9

46.549

81.866

0.381

  clpC Streptococcus thermophilus LMG 18311

46.474

81.997

0.381


Multiple sequence alignment