Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EL078_RS08635 Genome accession   NZ_LR134282
Coordinates   1729873..1731234 (-) Length   453 a.a.
NCBI ID   WP_126438227.1    Uniprot ID   -
Organism   Streptococcus equinus strain NCTC8140     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1724873..1736234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL078_RS08615 (NCTC8140_01747) - 1725305..1726471 (-) 1167 WP_074450840.1 CynX/NimT family MFS transporter -
  EL078_RS08620 (NCTC8140_01748) gltX 1726668..1728125 (-) 1458 WP_021143229.1 glutamate--tRNA ligase -
  EL078_RS08625 (NCTC8140_01749) - 1728304..1729230 (-) 927 WP_126438139.1 aldo/keto reductase -
  EL078_RS08630 (NCTC8140_01750) - 1729259..1729756 (-) 498 WP_004233355.1 beta-class carbonic anhydrase -
  EL078_RS08635 (NCTC8140_01751) radA 1729873..1731234 (-) 1362 WP_126438227.1 DNA repair protein RadA Machinery gene
  EL078_RS08640 (NCTC8140_01752) - 1731227..1731700 (-) 474 WP_126438140.1 isochorismatase family protein -
  EL078_RS08645 (NCTC8140_01753) - 1731751..1732197 (-) 447 WP_021143233.1 dUTP diphosphatase -
  EL078_RS08650 (NCTC8140_01754) - 1732224..1732991 (-) 768 WP_074629854.1 epoxyqueuosine reductase QueH -
  EL078_RS08655 (NCTC8140_01755) - 1733197..1734213 (+) 1017 WP_024344391.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  EL078_RS08660 (NCTC8140_01756) galU 1734285..1735205 (+) 921 WP_126438141.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  EL078_RS08665 (NCTC8140_01757) - 1735256..1735927 (-) 672 WP_126438142.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49480.89 Da        Isoelectric Point: 6.3749

>NTDB_id=1120000 EL078_RS08635 WP_126438227.1 1729873..1731234(-) (radA) [Streptococcus equinus strain NCTC8140]
MAKKKTTFICQECGYHSPKYLGRCPNCSSWTSFVEEVEVQEVKNARVSLTGEKSKPTKLKDVSSINYSRTKTGMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLAEKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRAQIE
QIQPDFLIIDSIQTIMSPDISGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKVYAPKNSLVSIDMPSSIEVVGVTTVGEVLKKVFK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1120000 EL078_RS08635 WP_126438227.1 1729873..1731234(-) (radA) [Streptococcus equinus strain NCTC8140]
ATCGCTAAGAAGAAAACAACGTTTATTTGTCAGGAGTGTGGCTATCATTCTCCTAAATATCTAGGACGTTGTCCAAACTG
TTCATCTTGGACGTCTTTTGTTGAAGAAGTCGAAGTACAAGAGGTTAAAAATGCGCGTGTCAGTTTGACAGGTGAAAAGA
GCAAACCAACTAAGTTGAAGGACGTTAGCTCGATTAATTATTCACGCACAAAGACTGGCATGGATGAATTTAACCGTGTG
CTCGGTGGTGGTGTGGTGCCAGGTAGTCTGGTGCTTATCGGTGGTGATCCAGGTATCGGGAAATCAACGCTTCTTTTACA
GGTTTCGATTCAGCTGGCAGAGAAAGGAACGGTTCTTTACGTTTCTGGTGAAGAATCAGCTGAGCAGATTAAACTTCGCA
GTGAACGCCTTGGTGACATTGATAATGAATTTTACCTTTATGCTGAGACAAATATGCAAGCTATCCGTGCGCAGATTGAG
CAAATCCAGCCTGATTTCTTAATTATTGACTCGATTCAAACGATTATGAGTCCTGATATTTCAGGAGTCCAAGGTTCGGT
ATCTCAAGTGCGTGAAGTGACGGCAGAGCTCATGCAGTTGGCTAAGACTAATAACATCGCAACCTTCATCGTTGGTCACG
TGACTAAGGAAGGGCAGCTTGCTGGTCCACGTATGCTTGAGCATATGGTGGATACGGTGCTTTATTTTGAGGGTGAACGC
CATCATACCTTCCGTATCTTGCGTGCAGTGAAAAACCGTTTTGGTTCAACTAACGAAATCGGCATTTTTGAAATGCAATC
GGGTGGGCTGGTTGAAGTGCTTAATCCGAGCCAAGTTTTCTTGGAAGAACGCTTGGATGGCGCAACTGGTTCAGCTATCG
TGGTAACCATGGAAGGTAGTCGCCCGATTTTGGCGGAGGTTCAAGCTTTGGTGACACCGACTGTTTTTGGAAATGCCAAA
CGCACAACGACTGGGCTTGATTTCAATCGCGTTAGTCTGATTATGGCGGTGCTTGAAAAACGTTGTGGACTTTTATTGCA
AAATCAAGATGCTTATCTCAAATCTGCTGGTGGTGTCAAACTTGATGAGCCAGCGATTGACTTGGCAGTAGCGGTAGCTA
TTGCGTCAAGCTACAAAGAAAAGCCGACAAATCCACAAGAAGCTTTTATCGGTGAAATTGGCTTGACAGGTGAAATCCGT
CGCGTCACTCGTATTGAACAACGTATCAATGAAGCAGCTAAGCTTGGCTTTACAAAAGTTTACGCACCGAAAAATTCTTT
AGTTAGTATTGATATGCCATCATCTATCGAAGTTGTTGGTGTGACAACTGTTGGAGAAGTTCTTAAGAAAGTTTTTAAAT
AG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(71-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.274

99.779

0.881
  radA Streptococcus pneumoniae D39

88.274

99.779

0.881
  radA Streptococcus pneumoniae R6

88.274

99.779

0.881
  radA Streptococcus pneumoniae TIGR4

88.274

99.779

0.881
  radA Streptococcus mitis SK321

88.274

99.779

0.881
  radA Streptococcus mitis NCTC 12261

88.053

99.779

0.879
  radA Bacillus subtilis subsp. subtilis str. 168

61.81

100

0.618

Multiple sequence alignment