Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   EL078_RS05530 Genome accession   NZ_LR134282
Coordinates   1083610..1084050 (-) Length   146 a.a.
NCBI ID   WP_126437902.1    Uniprot ID   -
Organism   Streptococcus equinus strain NCTC8140     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1073907..1099267 1083610..1084050 within 0


Gene organization within MGE regions


Location: 1073907..1099267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL078_RS05485 (NCTC8140_01108) - 1073907..1074752 (+) 846 WP_126437899.1 aldo/keto reductase -
  EL078_RS05490 (NCTC8140_01109) - 1074788..1076011 (-) 1224 WP_126437900.1 ATP-binding protein -
  EL078_RS05495 (NCTC8140_01110) - 1076019..1076699 (-) 681 WP_126437901.1 response regulator transcription factor -
  EL078_RS05500 (NCTC8140_01111) - 1076715..1077332 (-) 618 WP_033152788.1 GTP pyrophosphokinase family protein -
  EL078_RS05505 (NCTC8140_01112) - 1077422..1077583 (-) 162 Protein_1011 ABC transporter permease -
  EL078_RS05510 (NCTC8140_01113) - 1077608..1078048 (-) 441 WP_074669201.1 MarR family winged helix-turn-helix transcriptional regulator -
  EL078_RS09300 (NCTC8140_01114) - 1078051..1079922 (-) 1872 WP_164554312.1 hypothetical protein -
  EL078_RS05520 (NCTC8140_01115) rcrQ 1080030..1081802 (-) 1773 WP_074628589.1 ABC transporter ATP-binding protein Regulator
  EL078_RS05525 (NCTC8140_01116) rcrP 1081792..1083606 (-) 1815 WP_094140470.1 ABC transporter ATP-binding protein Regulator
  EL078_RS05530 (NCTC8140_01117) rcrR 1083610..1084050 (-) 441 WP_126437902.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  EL078_RS05535 (NCTC8140_01118) - 1084198..1084608 (-) 411 WP_027968635.1 peptide deformylase -
  EL078_RS05540 (NCTC8140_01119) - 1084611..1085114 (-) 504 WP_126437903.1 GNAT family N-acetyltransferase -
  EL078_RS05545 (NCTC8140_01120) gdhA 1085267..1086616 (-) 1350 WP_021142476.1 NADP-specific glutamate dehydrogenase -
  EL078_RS05550 (NCTC8140_01121) - 1086846..1087343 (+) 498 WP_021142477.1 DUF308 domain-containing protein -
  EL078_RS09345 (NCTC8140_01122) queF 1087382..1087873 (-) 492 WP_021142478.1 preQ(1) synthase -
  EL078_RS09350 (NCTC8140_01123) queE 1087889..1088602 (-) 714 WP_186330482.1 7-carboxy-7-deazaguanine synthase QueE -
  EL078_RS05560 (NCTC8140_01124) queD 1088595..1089041 (-) 447 WP_024343959.1 6-carboxytetrahydropterin synthase QueD -
  EL078_RS05565 (NCTC8140_01125) queC 1089041..1089694 (-) 654 WP_004232125.1 7-cyano-7-deazaguanine synthase QueC -
  EL078_RS05570 (NCTC8140_01126) - 1089860..1091629 (-) 1770 WP_126437904.1 ABC transporter ATP-binding protein -
  EL078_RS05575 (NCTC8140_01127) - 1091632..1093371 (-) 1740 WP_126437905.1 ABC transporter ATP-binding protein -
  EL078_RS05580 (NCTC8140_01128) - 1093415..1095283 (-) 1869 WP_126437906.1 ABC-F family ATP-binding cassette domain-containing protein -
  EL078_RS05585 (NCTC8140_01129) - 1095280..1096485 (-) 1206 WP_126437907.1 CCA tRNA nucleotidyltransferase -
  EL078_RS05590 (NCTC8140_01130) dapB 1096482..1097249 (-) 768 WP_004232139.1 4-hydroxy-tetrahydrodipicolinate reductase -
  EL078_RS05595 (NCTC8140_01131) - 1097270..1098118 (-) 849 WP_021142488.1 DegV family protein -
  EL078_RS05600 (NCTC8140_01132) - 1098118..1098498 (-) 381 WP_021142489.1 DUF1149 family protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 17082.58 Da        Isoelectric Point: 7.4038

>NTDB_id=1119983 EL078_RS05530 WP_126437902.1 1083610..1084050(-) (rcrR) [Streptococcus equinus strain NCTC8140]
MRDKDPFSQLRDFVNLMENRVHELGELHDVENLAGPQGFAVLYLRDNEDKEVFIKDIERKLKISKSVTSNLIKRMEKNGF
IKVVPSEVDKRYKRVVLTELGRAKTKDIDDFHAAVHKQIFDGISREELEISGRVFDRILKNLENKE

Nucleotide


Download         Length: 441 bp        

>NTDB_id=1119983 EL078_RS05530 WP_126437902.1 1083610..1084050(-) (rcrR) [Streptococcus equinus strain NCTC8140]
ATGCGAGATAAAGATCCGTTTTCACAATTAAGAGACTTCGTTAATTTGATGGAAAACCGTGTGCACGAACTCGGTGAACT
TCATGATGTGGAGAACTTAGCTGGTCCGCAGGGGTTTGCGGTTTTATATTTGAGAGATAATGAAGATAAAGAAGTTTTCA
TTAAAGATATTGAACGTAAGCTTAAAATTTCAAAATCTGTAACCAGTAATTTGATTAAAAGAATGGAAAAGAATGGTTTT
ATAAAAGTTGTTCCATCTGAAGTAGATAAACGTTACAAGCGTGTAGTGCTTACTGAACTTGGTCGAGCTAAGACAAAAGA
TATTGATGACTTTCACGCTGCGGTTCACAAGCAAATTTTTGATGGCATTAGTCGTGAAGAGCTAGAAATTTCTGGTCGTG
TCTTTGATCGTATTTTGAAAAATTTAGAAAACAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(35-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

52.448

97.945

0.514

Multiple sequence alignment