Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   EL078_RS03450 Genome accession   NZ_LR134282
Coordinates   652269..653135 (+) Length   288 a.a.
NCBI ID   WP_126437718.1    Uniprot ID   -
Organism   Streptococcus equinus strain NCTC8140     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 647269..658135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL078_RS03420 (NCTC8140_00687) - 647487..648362 (+) 876 WP_004231084.1 F0F1 ATP synthase subunit gamma -
  EL078_RS03425 (NCTC8140_00688) atpD 648428..649834 (+) 1407 WP_024344335.1 F0F1 ATP synthase subunit beta -
  EL078_RS03430 (NCTC8140_00689) - 649847..650263 (+) 417 WP_021142000.1 F0F1 ATP synthase subunit epsilon -
  EL078_RS03435 (NCTC8140_00690) - 650405..650641 (+) 237 WP_021142001.1 DUF1146 family protein -
  EL078_RS03440 (NCTC8140_00691) murA 650704..651978 (+) 1275 WP_021142002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  EL078_RS03445 (NCTC8140_00692) - 651981..652169 (+) 189 WP_024344337.1 DNA-directed RNA polymerase subunit beta -
  EL078_RS03450 (NCTC8140_00693) endA 652269..653135 (+) 867 WP_126437718.1 DNA/RNA non-specific endonuclease Machinery gene
  EL078_RS03455 (NCTC8140_00694) pheS 653424..654467 (+) 1044 WP_027967999.1 phenylalanine--tRNA ligase subunit alpha -
  EL078_RS03460 (NCTC8140_00695) - 654499..655023 (+) 525 WP_021142007.1 GNAT family N-acetyltransferase -
  EL078_RS03465 (NCTC8140_00696) pheT 655093..657498 (+) 2406 WP_126437719.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 30665.81 Da        Isoelectric Point: 8.2963

>NTDB_id=1119975 EL078_RS03450 WP_126437718.1 652269..653135(+) (endA) [Streptococcus equinus strain NCTC8140]
MAKKSNLSKKTKSIISLLVLLVGIGTGWVTTSDSSDPVSQVLSLVTGESSSQVASNHSSANESAPSQELAESVLTDNVKA
QLGSTIEWNGAGAYLVNGNKTSLNAKVASKPYANNKTKVVQGQSVPTVANALLSKSTRQYRSREETGNGSTSWTPAGWHQ
VQNLSGTYSHAVDRGHLLGYALVGGLKGFDASTSNPENVATQTAWANEARSEDSTGQNYYEGLVRRALDQNKRVRYRVTL
IYDGDNILASGTHLEAKSSDGSLEFNVFVPNVQSGLTIDYYSGQVSVN

Nucleotide


Download         Length: 867 bp        

>NTDB_id=1119975 EL078_RS03450 WP_126437718.1 652269..653135(+) (endA) [Streptococcus equinus strain NCTC8140]
ATGGCAAAAAAATCAAATCTGTCTAAAAAGACAAAATCAATTATCTCTTTACTGGTTTTATTAGTTGGTATTGGAACAGG
ATGGGTAACGACATCTGATTCTAGTGACCCAGTCAGTCAAGTTTTATCCCTTGTTACGGGAGAATCATCATCGCAGGTTG
CTTCAAATCATTCAAGTGCTAATGAATCAGCACCAAGTCAGGAATTGGCTGAGTCAGTTTTAACTGATAATGTTAAAGCA
CAGTTGGGTTCAACTATTGAATGGAATGGAGCAGGGGCTTATCTTGTAAATGGAAATAAAACCTCTTTGAATGCAAAGGT
TGCAAGCAAACCTTATGCCAATAATAAGACGAAAGTTGTACAAGGACAGTCAGTTCCGACAGTTGCTAACGCACTTTTGA
GTAAGTCAACCCGTCAATACCGAAGCCGTGAGGAAACAGGTAATGGCTCAACCTCTTGGACGCCAGCTGGTTGGCATCAA
GTACAAAATCTATCTGGAACTTATAGCCATGCGGTTGATCGTGGGCATTTGCTTGGATACGCTTTAGTTGGTGGGCTAAA
AGGTTTTGATGCCTCAACAAGTAACCCTGAAAATGTTGCTACTCAGACAGCTTGGGCAAATGAGGCTAGATCAGAAGATT
CAACAGGACAGAATTACTATGAAGGGCTTGTCCGTCGAGCACTTGATCAGAATAAACGCGTTCGCTATCGTGTGACTTTG
ATTTATGATGGGGACAATATTTTAGCTAGTGGAACACATTTAGAAGCAAAATCATCTGACGGTAGCTTAGAGTTTAATGT
CTTTGTTCCAAATGTTCAAAGTGGACTTACGATTGACTATTATTCTGGTCAGGTTAGTGTGAATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(96-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

72

78.125

0.563
  endA Streptococcus pneumoniae D39

72

78.125

0.563
  endA Streptococcus pneumoniae R6

72

78.125

0.563
  endA Streptococcus pneumoniae TIGR4

72

78.125

0.563

Multiple sequence alignment