Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EL078_RS03120 Genome accession   NZ_LR134282
Coordinates   578963..580765 (+) Length   600 a.a.
NCBI ID   WP_074669097.1    Uniprot ID   -
Organism   Streptococcus equinus strain NCTC8140     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 573963..585765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL078_RS03095 (NCTC8140_00620) queA 574670..575698 (-) 1029 WP_021141922.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  EL078_RS03100 (NCTC8140_00621) - 575858..576364 (+) 507 WP_021141923.1 VIT1/CCC1 transporter family protein -
  EL078_RS03105 (NCTC8140_00622) nagB 576498..577202 (+) 705 WP_126437694.1 glucosamine-6-phosphate deaminase -
  EL078_RS03110 (NCTC8140_00623) - 577235..577951 (+) 717 WP_126437695.1 pseudouridine synthase -
  EL078_RS03115 (NCTC8140_00624) coiA 578001..578963 (+) 963 WP_126437696.1 competence protein CoiA Machinery gene
  EL078_RS03120 (NCTC8140_00625) pepF 578963..580765 (+) 1803 WP_074669097.1 oligoendopeptidase F Regulator
  EL078_RS03125 (NCTC8140_00626) - 580840..581355 (+) 516 WP_126437697.1 GNAT family N-acetyltransferase -
  EL078_RS03130 (NCTC8140_00627) - 581357..581968 (+) 612 WP_126437698.1 HAD-IA family hydrolase -
  EL078_RS03135 (NCTC8140_00628) - 582020..582721 (+) 702 WP_126437699.1 O-methyltransferase -
  EL078_RS03140 (NCTC8140_00629) - 582790..583851 (+) 1062 WP_021141931.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69247.27 Da        Isoelectric Point: 4.6842

>NTDB_id=1119973 EL078_RS03120 WP_074669097.1 578963..580765(+) (pepF) [Streptococcus equinus strain NCTC8140]
MSDNRSHIDEKYKWDLSTVFATDDAWEEALAELDSDLEDAKKFKGHLIESSKTLLDITESYLELSRRLEKVYVYASMKND
QDTTVAKYQEFEAKATTLYAKYSEVFAFYEPELMQLSQDDFAKFVAETPALSAYAHFFEKLFKRQAHVLSQKEEELLAGA
HEIFGAAGETFEILDNADIVFPVVLDDEGNEVQLTHGNFISLLESKNRDVRKAAYEAMYATYEQYQHTYAKTLQTNVKVH
NFDARVHHFKSAREAALSANFIPESVYDTLIERVNAHLPLLHRYVELRKKVLKLDDLKMYDIHTPLSEMDMSFTYEEALK
KAEEVLSVFGKDYSERVHRAFTERWIDVHVNKGKRSGAYSGGAYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTRET
QPYVYGDYSIFLAEIASTTNENILTETLLKEVDDDKARFAILNHYLDGFKGTIFRQAQFAEFEDIIHKADQNGEVLTSEY
LNGIYADLNEKYYGLSKEDNPEIQYEWARIPHFYYNYYVYQYATGFAAASYLADKVVHGTSDDINRYLDYLKAGNSDYPL
NVIKKAGVDMTSSDYLDAAFKIFEERLNELETLVEKGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1119973 EL078_RS03120 WP_074669097.1 578963..580765(+) (pepF) [Streptococcus equinus strain NCTC8140]
ATGTCAGATAATCGTAGTCATATTGATGAAAAGTATAAATGGGATTTGAGTACTGTCTTTGCAACAGATGATGCTTGGGA
AGAAGCACTAGCTGAGCTTGATTCAGATTTAGAAGATGCTAAAAAATTTAAAGGGCACTTGATTGAATCAAGTAAGACTT
TGCTCGATATCACTGAAAGTTATCTTGAATTGTCACGCCGCTTGGAAAAAGTTTATGTCTATGCGTCAATGAAAAATGAC
CAAGATACAACGGTTGCTAAATACCAAGAATTTGAAGCAAAAGCAACAACGCTTTACGCCAAATACAGCGAAGTTTTTGC
ATTTTATGAACCAGAATTGATGCAATTATCTCAAGACGATTTCGCCAAATTCGTGGCTGAAACACCAGCGCTTTCAGCTT
ATGCTCATTTCTTTGAAAAACTTTTCAAACGTCAAGCGCACGTTTTGTCACAAAAAGAAGAAGAGCTGCTAGCAGGTGCT
CACGAAATCTTTGGTGCAGCTGGAGAGACTTTTGAAATTCTAGATAATGCTGACATTGTCTTTCCTGTTGTTTTGGATGA
TGAGGGCAATGAAGTTCAACTAACACATGGTAACTTCATCAGTCTTTTGGAATCAAAAAATCGCGATGTTCGAAAAGCGG
CTTACGAGGCTATGTATGCTACGTATGAACAATATCAACATACTTATGCCAAAACACTTCAAACAAATGTAAAAGTTCAT
AACTTTGATGCTCGTGTTCACCATTTCAAATCAGCGCGTGAAGCAGCACTTTCAGCAAACTTCATTCCTGAATCTGTCTA
CGATACTTTGATTGAACGCGTGAATGCACACTTGCCATTGCTTCATCGTTATGTGGAACTTCGTAAGAAAGTTCTTAAAC
TTGATGATTTGAAAATGTATGATATTCATACACCTTTGTCTGAAATGGATATGAGTTTCACTTACGAGGAAGCTCTGAAA
AAAGCAGAAGAGGTTTTGTCTGTCTTTGGTAAAGATTATTCAGAACGTGTTCATCGAGCTTTCACAGAACGCTGGATTGA
CGTTCATGTCAACAAAGGAAAACGTTCAGGAGCTTATTCTGGTGGGGCTTATGATACAAATGCATTTATGCTTTTGAACT
GGCAAGATACACTTGATAATCTTTTCACTTTGGTACACGAAACAGGGCACAGCCTTCATTCGACTTTTACGCGTGAAACT
CAACCATACGTTTACGGTGATTACAGCATTTTCTTGGCTGAAATTGCTTCAACGACGAATGAAAATATCTTAACAGAAAC
ACTCTTAAAAGAAGTTGATGATGACAAAGCACGCTTTGCAATTTTGAATCACTACTTGGATGGTTTCAAAGGAACTATTT
TCCGTCAAGCACAATTTGCTGAATTTGAAGATATTATCCATAAAGCTGACCAAAATGGTGAAGTCTTGACGAGTGAATAC
CTCAATGGCATTTATGCTGACTTAAATGAAAAATATTACGGACTCAGCAAAGAAGATAATCCAGAAATTCAATACGAATG
GGCACGCATTCCGCATTTCTACTATAATTACTATGTTTATCAATATGCGACAGGTTTTGCGGCAGCAAGTTATCTAGCTG
ACAAAGTAGTTCACGGTACATCAGATGACATTAACCGCTACCTTGACTATCTCAAGGCTGGTAATTCTGATTATCCGTTA
AATGTGATTAAAAAAGCTGGTGTGGATATGACAAGCAGTGATTATTTGGATGCTGCATTCAAGATTTTTGAAGAACGTCT
AAATGAATTAGAAACTTTGGTTGAAAAAGGGGCACACCTTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71.167

100

0.712

Multiple sequence alignment