Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EL169_RS10935 Genome accession   NZ_LR134280
Coordinates   2104493..2105089 (-) Length   198 a.a.
NCBI ID   WP_023312915.1    Uniprot ID   -
Organism   Klebsiella pneumoniae strain NCTC9793     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2099493..2110089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL169_RS10920 (NCTC9793_02106) helD 2099701..2101755 (-) 2055 WP_023312916.1 DNA helicase IV -
  EL169_RS10925 (NCTC9793_02107) - 2101880..2102326 (+) 447 WP_002898425.1 YccF domain-containing protein -
  EL169_RS10930 (NCTC9793_02108) yccS 2102344..2104479 (+) 2136 WP_002898422.1 YccS family putative transporter -
  EL169_RS10935 (NCTC9793_02109) sxy/tfoX 2104493..2105089 (-) 597 WP_023312915.1 TfoX/Sxy family DNA transformation protein Regulator
  EL169_RS10945 (NCTC9793_02110) sulA 2105438..2105947 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  EL169_RS10950 (NCTC9793_02111) ompA 2106300..2107370 (+) 1071 WP_002898408.1 porin OmpA -
  EL169_RS10955 (NCTC9793_02112) matP 2107502..2107954 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  EL169_RS10960 (NCTC9793_02113) - 2108140..2109897 (+) 1758 WP_016529118.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22515.13 Da        Isoelectric Point: 10.2361

>NTDB_id=1119927 EL169_RS10935 WP_023312915.1 2104493..2105089(-) (sxy/tfoX) [Klebsiella pneumoniae strain NCTC9793]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDNTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1119927 EL169_RS10935 WP_023312915.1 2104493..2105089(-) (sxy/tfoX) [Klebsiella pneumoniae strain NCTC9793]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATAATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505

Multiple sequence alignment