Detailed information NTG1119865

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: EL076_RS01105
• Genome accession: NZ_LR134275
• Coordinates: 189984..190922 (+)
• Length: 312 a.a.
• NCBI ID: WP_003098114.1
• Uniprot ID: A0AAW7QFT6
• Organism: Streptococcus vestibularis strain NCTC12167
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 184984..195922

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL076_RS01085 (NCTC12167_00212)	-	185195..186841 (+)	1647	WP_003098122.1	peptide ABC transporter substrate-binding protein	-
EL076_RS01090 (NCTC12167_00213)	-	186972..187886 (+)	915	WP_126428943.1	ABC transporter permease	-
EL076_RS01095 (NCTC12167_00214)	-	187897..188928 (+)	1032	WP_408055269.1	ABC transporter permease	-
EL076_RS01100 (NCTC12167_00215)	oppD	188942..189982 (+)	1041	WP_037621603.1	ABC transporter ATP-binding protein	Regulator
EL076_RS01105 (NCTC12167_00216)	amiF	189984..190922 (+)	939	WP_003098114.1	ABC transporter ATP-binding protein	Regulator
EL076_RS10155	-	191151..191315 (+)	165	WP_003098113.1	hypothetical protein	-
EL076_RS01115 (NCTC12167_00217)	hslO	191433..192299 (+)	867	WP_002883609.1	Hsp33 family molecular chaperone HslO	-
EL076_RS01120 (NCTC12167_00218)	dusB	192292..193269 (+)	978	WP_117647330.1	tRNA dihydrouridine synthase DusB	-
EL076_RS01125 (NCTC12167_00219)	-	193498..194766 (+)	1269	WP_003095034.1	hypothetical protein	-
EL076_RS01130 (NCTC12167_00220)	-	194872..195315 (+)	444	WP_003095002.1	zinc-dependent MarR family transcriptional regulator	-

Sequence

Protein

• Length: 312 a.a.
• Molecular weight: 35194.93 Da
• Isoelectric Point: 6.5087

>NTDB_id=1119865 EL076_RS01105 WP_003098114.1 189984..190922(+) (amiF) [Streptococcus vestibularis strain NCTC12167]
MTQERKKLVELKNVSLTFNKGKSNEVKAIDDVSFDIYEGEIFGLVGESGSGKTTIGRSVLKLSDIDSGTITFSGNEISSL
KGKDLHDFRKTAQMIFQDPQASLNGRMKIRDIIAEGIDIHKLAKSKEEREAKVKELIDLVGLNEDHLSRYPHEFSGGQRQ
RIGIARALAVNPHFIVADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGPADE
IYHNPIHPYTKSLLSAIPEPDPERERKRQHLIYNSSIENDGENRQMYEIRPGHFVYATEAEAKNYKEEAKAN

Nucleotide

• Length: 939 bp

>NTDB_id=1119865 EL076_RS01105 WP_003098114.1 189984..190922(+) (amiF) [Streptococcus vestibularis strain NCTC12167]
ATGACACAAGAACGTAAAAAGTTAGTAGAACTAAAAAATGTGTCTCTAACTTTTAATAAAGGAAAATCAAACGAAGTTAA
GGCTATTGATGACGTTAGCTTTGATATCTATGAGGGCGAAATTTTTGGCCTAGTTGGCGAATCTGGATCAGGTAAAACAA
CCATTGGGCGTTCTGTTTTAAAACTTTCTGATATTGATTCGGGTACTATTACCTTTTCAGGTAATGAGATATCAAGTTTA
AAAGGAAAAGATCTTCATGATTTCCGTAAGACAGCTCAGATGATTTTTCAAGATCCTCAAGCTAGTCTTAATGGACGCAT
GAAAATCCGTGATATTATTGCTGAAGGCATTGATATTCATAAATTGGCTAAATCTAAGGAAGAGCGTGAAGCTAAGGTTA
AAGAACTCATTGATTTGGTAGGGTTAAATGAAGATCACCTATCAAGATATCCTCATGAGTTTTCTGGTGGTCAACGTCAA
AGGATTGGTATTGCGCGTGCTTTAGCGGTTAATCCTCATTTTATTGTAGCAGACGAACCGATTTCTGCTTTGGATGTTTC
TATTCAAGCACAAGTGGTTAATTTGATGCAGAAGTTGCAACATGAACAGGGGTTAACTTATTTGTTTATTGCCCATGATC
TGTCAATGGTTAAATATATATCCGATCGCATTGGTGTGATGCATTGGGGTAAACTCCTTGAAGTAGGACCAGCAGATGAG
ATTTATCATAATCCAATTCATCCTTATACAAAGAGTCTATTGTCTGCAATTCCAGAACCAGATCCAGAAAGAGAGCGTAA
GCGTCAGCATTTGATTTACAATTCCTCTATTGAAAATGATGGGGAAAATAGACAAATGTATGAAATCCGACCAGGGCATT
TTGTTTATGCTACAGAAGCAGAGGCTAAAAATTATAAAGAAGAAGCCAAGGCTAATTAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-265)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.098	97.756	0.529
amiF	Streptococcus thermophilus LMG 18311	53.77	97.756	0.526
amiF	Streptococcus salivarius strain HSISS4	53.443	97.756	0.522