Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   EL086_RS07535 Genome accession   NZ_LR134274
Coordinates   1653114..1654043 (-) Length   309 a.a.
NCBI ID   WP_038676505.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NCTC8618     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1648114..1659043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL086_RS07510 (NCTC8618_03928) - 1649399..1650217 (-) 819 WP_038676498.1 Cof-type HAD-IIB family hydrolase -
  EL086_RS07515 (NCTC8618_03929) - 1650210..1651004 (-) 795 WP_038676501.1 HAD family hydrolase -
  EL086_RS07520 (NCTC8618_03930) - 1651186..1651563 (+) 378 WP_022496273.1 GntR family transcriptional regulator -
  EL086_RS07525 (NCTC8618_03931) - 1651568..1652266 (+) 699 WP_038676503.1 ABC transporter ATP-binding protein -
  EL086_RS07530 (NCTC8618_03932) - 1652278..1653063 (+) 786 WP_021143813.1 hypothetical protein -
  EL086_RS07535 (NCTC8618_03933) amiF 1653114..1654043 (-) 930 WP_038676505.1 ATP-binding cassette domain-containing protein Regulator
  EL086_RS07540 (NCTC8618_03934) amiE 1654036..1655121 (-) 1086 WP_038676507.1 ABC transporter ATP-binding protein Regulator
  EL086_RS07545 (NCTC8618_03935) amiD 1655131..1656057 (-) 927 WP_038676509.1 oligopeptide ABC transporter permease OppC Regulator
  EL086_RS07550 (NCTC8618_03936) amiC 1656057..1657550 (-) 1494 WP_038676511.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35077.13 Da        Isoelectric Point: 6.5820

>NTDB_id=1119830 EL086_RS07535 WP_038676505.1 1653114..1654043(-) (amiF) [Streptococcus salivarius strain NCTC8618]
MPEKLVEVKDVEISFGEGSKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDDKKINGHLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLHNFHLYKDEEDRKAKIKKIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERQKVLKVYDPNQHDYSVDKPEMVELRPGHFVWGNKAEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=1119830 EL086_RS07535 WP_038676505.1 1653114..1654043(-) (amiF) [Streptococcus salivarius strain NCTC8618]
ATGCCTGAGAAGTTAGTTGAAGTAAAAGATGTGGAGATTTCCTTCGGTGAAGGAAGCAAGAAATTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTTTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACTACTATCGGTCGTG
CCATTATTGGTTTAAATGATACAAGTAATGGTGAGATTATTTTTGACGATAAGAAAATCAATGGACACTTGTCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATCCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCAACAGTCGA
TTATATCTTGTCTGAGGGCTTGCATAACTTCCATCTCTATAAGGATGAGGAAGATCGTAAAGCTAAAATCAAGAAAATCA
TCAAAGAAGTGGGACTTCTTGAGGAGCACTTGACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATTGGG
ATTGCACGTTCCTTGGTCATGCAACCGGACTTGGTCATCGCTGACGAACCAATCTCAGCCCTTGACGTGTCAGTCCGTGC
CCAAGTTTTGAACTTGCTTAAGAAATTCCAAAAAGAGTTGGGATTGACCTACCTCTTTATCGCTCACGACTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATTTACAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAACTCTACAAC
AATCCTATCCACCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGACCCAATCTTGGAACGTCAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTTGAATTACGTCCAGGACACTTCGTTT
GGGGTAACAAGGCCGAAATCGAGACTTATCGTAAAGAACAAAGTAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(26-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

99.029

100

0.99
  amiF Streptococcus thermophilus LMG 18311

97.087

100

0.971
  amiF Streptococcus thermophilus LMD-9

96.764

100

0.968

Multiple sequence alignment