Detailed information    

insolico Bioinformatically predicted

Overview


Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   BBS_RS04720 Genome accession   NZ_CP004003
Coordinates   1075085..1076593 (+) Length   502 a.a.
NCBI ID   WP_004195216.1    Uniprot ID   A0AAX1X7H0
Organism   Burkholderia pseudomallei NAU20B-16     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1070085..1081593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBS_RS04695 (BBS_932) kdsD 1071317..1072300 (+) 984 WP_004195206.1 arabinose 5-phosphate isomerase KdsD -
  BBS_RS04700 (BBS_933) - 1072300..1072839 (+) 540 WP_004200146.1 KdsC family phosphatase -
  BBS_RS04705 (BBS_934) lptC 1072845..1073459 (+) 615 WP_004522855.1 LPS export ABC transporter periplasmic protein LptC -
  BBS_RS04710 (BBS_935) lptA 1073478..1074143 (+) 666 WP_004195213.1 lipopolysaccharide transport periplasmic protein LptA -
  BBS_RS04715 (BBS_936) lptB 1074140..1074916 (+) 777 WP_004195214.1 LPS export ABC transporter ATP-binding protein -
  BBS_RS04720 (BBS_938) rpoN/rpoN1 1075085..1076593 (+) 1509 WP_004195216.1 RNA polymerase factor sigma-54 Machinery gene
  BBS_RS04725 (BBS_939) hpf 1076743..1077102 (+) 360 WP_004195219.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  BBS_RS04730 (BBS_940) ptsN 1077335..1077844 (+) 510 WP_004534308.1 PTS IIA-like nitrogen regulatory protein PtsN -
  BBS_RS04735 (BBS_941) hprK 1077973..1078941 (+) 969 WP_004195225.1 HPr(Ser) kinase/phosphatase -
  BBS_RS04740 (BBS_942) rapZ 1079027..1079920 (+) 894 WP_004530937.1 RNase adapter RapZ -
  BBS_RS04745 (BBS_943) - 1079947..1080579 (+) 633 WP_004195230.1 LON peptidase substrate-binding domain-containing protein -

Sequence


Protein


Download         Length: 502 a.a.        Molecular weight: 54889.04 Da        Isoelectric Point: 4.8740

>NTDB_id=111973 BBS_RS04720 WP_004195216.1 1075085..1076593(+) (rpoN/rpoN1) [Burkholderia pseudomallei NAU20B-16]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVATAIAQNPLLENDDDWIASPLRVAADGSVIAQTPASSAPEPMA
GAPNGTAATNERTERDETAGVDEYDSYSADGGDASQWNLDDFGRSPAASDDDDLPPMQIHETSTSLRDHLMAQLRVTQAS
PRDRALVTFLIESLDDDGYLSASLEEVLADLPAELEVDVDELNAALALVHSFDPAGVGARSASECLKLQLLRLDPSPTRA
LALDIVSQHLELLAARDFTRLRKQLKATDDALRDAHALIRSLEPFPGAAYGKAEADYVVPDIIVKKAGQNWQAELNPEVV
PKLRINNLYANILRNSRGDPSAGSLKQQLQEARWLIKNIQQRFETILRVAQAIVERQKNFFAHGEIAMRPLVLREIADTL
GLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDPKSPLSDSRIAELLAEQGFVVA
RRTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=111973 BBS_RS04720 WP_004195216.1 1075085..1076593(+) (rpoN/rpoN1) [Burkholderia pseudomallei NAU20B-16]
ATGAAAGCCAGTCTTCAACTTCGCCTGTCGCAGCATCTCGCGCTCACGCCCCAGCTTCAGCAGTCGATCCGGCTGCTGCA
ACTGTCGACGCTCGAACTGCAACAGGAAGTCGCGACGGCGATCGCGCAGAACCCGCTGCTCGAGAACGACGATGACTGGA
TCGCGAGCCCGTTGCGCGTCGCGGCCGACGGCTCGGTGATCGCGCAGACGCCCGCGTCGTCCGCGCCCGAGCCGATGGCG
GGCGCGCCGAACGGCACGGCTGCGACCAATGAGCGCACCGAGCGCGACGAAACCGCCGGCGTCGACGAATACGACAGCTA
TTCGGCCGACGGCGGCGACGCGAGCCAGTGGAACCTCGACGACTTCGGCCGCTCGCCCGCCGCGTCCGACGACGACGATC
TGCCGCCGATGCAGATCCACGAGACGTCGACGTCGCTGCGCGATCATCTGATGGCGCAGTTGCGCGTCACGCAGGCGAGC
CCGCGCGATCGCGCGCTCGTCACGTTCCTGATCGAATCGCTCGACGACGACGGCTACCTGAGCGCGTCGCTTGAGGAAGT
GCTCGCCGATCTGCCGGCGGAGCTCGAGGTCGACGTCGACGAACTGAACGCGGCGCTCGCGCTCGTGCACAGCTTCGATC
CGGCGGGCGTCGGCGCGCGCTCCGCGTCCGAATGCCTGAAGCTGCAGTTGCTGCGCCTGGATCCGTCCCCGACGCGCGCG
CTCGCGCTCGATATCGTGTCGCAGCATCTGGAGCTGCTCGCCGCGCGCGATTTCACGCGCCTGCGCAAGCAACTGAAGGC
GACCGACGACGCGCTGCGCGACGCGCACGCGCTGATCCGCTCGCTCGAGCCGTTCCCCGGCGCGGCGTACGGCAAGGCCG
AAGCCGATTACGTGGTGCCCGACATCATCGTGAAGAAGGCCGGCCAGAACTGGCAGGCGGAACTCAATCCGGAAGTGGTG
CCGAAGCTGCGGATCAACAATCTTTACGCGAACATCCTGCGCAACAGCCGGGGCGATCCGAGCGCGGGATCGCTGAAGCA
ACAGCTTCAGGAAGCGCGCTGGCTGATCAAGAACATTCAGCAGCGGTTCGAGACGATCCTGCGCGTCGCGCAGGCGATTG
TCGAGCGTCAGAAGAATTTCTTCGCGCACGGCGAAATTGCGATGCGCCCCTTGGTTTTGCGGGAAATAGCTGATACGCTG
GGCCTACACGAGTCGACTGTCTCCCGTGTGACAACCGGCAAGTACATGCTGACCCCGTTCGGCACACTTGAATTTAAGTA
CTTCTTCGGATCGCACGTATCGACAGACACCGGAGGTGCCGCGTCGTCGACAGCGATCCGCGCCCTCATCAAACAACTGA
TAGGAGCCGAAGACCCCAAATCCCCTCTTTCGGACAGTCGCATAGCCGAGCTGCTAGCGGAACAAGGGTTCGTGGTCGCG
CGCCGCACGGTTGCCAAATATCGCGAAGCCCTCAAGATCCCGGCGGTGAATCTGCGCAAGTCTCTGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

68.713

100

0.691


Multiple sequence alignment