Detailed information
Bioinformatically predicted
Overview
| Name | comGD | Type | Machinery gene |
| Locus tag | EL082_RS12105 | Genome accession | NZ_LR134269 |
| Coordinates | 1227898..1228338 (+) | Length | 146 a.a. |
| NCBI ID | WP_015364970.1 | Uniprot ID | - |
| Organism | Staphylococcus warneri strain NCTC11044 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1222898..1233338
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL082_RS06035 (NCTC11044_01242) | - | 1223395..1223598 (+) | 204 | WP_002451885.1 | YqgQ family protein | - |
| EL082_RS06040 (NCTC11044_01243) | - | 1223595..1224581 (+) | 987 | WP_103286295.1 | ROK family glucokinase | - |
| EL082_RS06045 (NCTC11044_01244) | - | 1224581..1224904 (+) | 324 | WP_015364969.1 | MTH1187 family thiamine-binding protein | - |
| EL082_RS06050 (NCTC11044_01245) | - | 1224908..1225531 (+) | 624 | WP_002465751.1 | MBL fold metallo-hydrolase | - |
| EL082_RS06055 | comGA | 1225578..1226551 (+) | 974 | Protein_1160 | competence type IV pilus ATPase ComGA | - |
| EL082_RS06060 (NCTC11044_01248) | comGB | 1226523..1227590 (+) | 1068 | WP_002465743.1 | competence type IV pilus assembly protein ComGB | - |
| EL082_RS06065 (NCTC11044_01249) | comGC | 1227603..1227920 (+) | 318 | WP_002465742.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| EL082_RS12105 | comGD | 1227898..1228338 (+) | 441 | WP_015364970.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| EL082_RS06075 (NCTC11044_01250) | - | 1228536..1229033 (+) | 498 | WP_002465737.1 | competence type IV pilus minor pilin ComGF | - |
| EL082_RS06085 | - | 1229192..1229710 (+) | 519 | WP_164553445.1 | shikimate kinase | - |
| EL082_RS06090 (NCTC11044_01252) | gcvT | 1229882..1230973 (+) | 1092 | WP_002465750.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| EL082_RS06095 (NCTC11044_01253) | gcvPA | 1230992..1232341 (+) | 1350 | WP_103286297.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 17009.34 Da Isoelectric Point: 10.5759
>NTDB_id=1119664 EL082_RS12105 WP_015364970.1 1227898..1228338(+) (comGD) [Staphylococcus warneri strain NCTC11044]
MAKRLQIKAYNYIEILMVLFILSILLLCTLSSKNLLTLSMSNDEMNINLLITQLNYIKSKAISEKQSITLMFNHQSSHIN
VKEEHGKKYQIKIKDGKIIKITKINLITFDKNGNVNHFGSLNIKMKHSIYKVIFHIEKGRIRYTKL
MAKRLQIKAYNYIEILMVLFILSILLLCTLSSKNLLTLSMSNDEMNINLLITQLNYIKSKAISEKQSITLMFNHQSSHIN
VKEEHGKKYQIKIKDGKIIKITKINLITFDKNGNVNHFGSLNIKMKHSIYKVIFHIEKGRIRYTKL
Nucleotide
Download Length: 441 bp
>NTDB_id=1119664 EL082_RS12105 WP_015364970.1 1227898..1228338(+) (comGD) [Staphylococcus warneri strain NCTC11044]
ATGGCGAAGCGATTGCAAATTAAAGCGTATAATTACATAGAAATATTAATGGTATTATTCATTTTGTCTATACTATTGTT
GTGTACTTTAAGCAGTAAAAATCTTTTAACATTATCAATGTCTAATGATGAAATGAATATTAATCTACTAATAACTCAAT
TGAATTATATAAAATCAAAAGCAATTAGCGAAAAACAATCAATCACTTTAATGTTTAATCATCAATCTTCTCATATAAAT
GTTAAAGAAGAACATGGTAAAAAGTATCAAATAAAAATAAAAGATGGGAAGATCATAAAGATAACGAAAATAAATCTAAT
TACCTTTGATAAAAATGGCAATGTTAATCATTTTGGTTCGTTAAATATAAAAATGAAACATTCAATATACAAAGTCATAT
TTCATATTGAGAAAGGACGAATAAGGTATACCAAACTATAA
ATGGCGAAGCGATTGCAAATTAAAGCGTATAATTACATAGAAATATTAATGGTATTATTCATTTTGTCTATACTATTGTT
GTGTACTTTAAGCAGTAAAAATCTTTTAACATTATCAATGTCTAATGATGAAATGAATATTAATCTACTAATAACTCAAT
TGAATTATATAAAATCAAAAGCAATTAGCGAAAAACAATCAATCACTTTAATGTTTAATCATCAATCTTCTCATATAAAT
GTTAAAGAAGAACATGGTAAAAAGTATCAAATAAAAATAAAAGATGGGAAGATCATAAAGATAACGAAAATAAATCTAAT
TACCTTTGATAAAAATGGCAATGTTAATCATTTTGGTTCGTTAAATATAAAAATGAAACATTCAATATACAAAGTCATAT
TTCATATTGAGAAAGGACGAATAAGGTATACCAAACTATAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGD | Staphylococcus aureus MW2 |
48.993 |
100 |
0.5 |
| comGD | Staphylococcus aureus N315 |
48.993 |
100 |
0.5 |