Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   EL082_RS01070 Genome accession   NZ_LR134269
Coordinates   238139..238804 (+) Length   221 a.a.
NCBI ID   WP_047211221.1    Uniprot ID   -
Organism   Staphylococcus warneri strain NCTC11044     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 233139..243804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL082_RS01050 (NCTC11044_00217) - 233732..234181 (+) 450 WP_002467363.1 MarR family winged helix-turn-helix transcriptional regulator -
  EL082_RS01055 (NCTC11044_00218) - 234416..235882 (+) 1467 WP_103286228.1 poly-gamma-glutamate hydrolase family protein -
  EL082_RS01060 (NCTC11044_00219) - 236064..236165 (+) 102 WP_015364644.1 SE2200 family small protein -
  EL082_RS01065 (NCTC11044_00220) - 236248..237702 (-) 1455 WP_103286227.1 alkaline phosphatase -
  EL082_RS11885 (NCTC11044_00221) - 237959..238117 (+) 159 WP_002467360.1 hypothetical protein -
  EL082_RS01070 (NCTC11044_00222) braR 238139..238804 (+) 666 WP_047211221.1 response regulator transcription factor Regulator
  EL082_RS01075 (NCTC11044_00223) braS 238810..239706 (+) 897 WP_047211220.1 sensor histidine kinase Regulator
  EL082_RS01080 (NCTC11044_00224) - 239810..240556 (+) 747 WP_103286226.1 ABC transporter ATP-binding protein -
  EL082_RS01085 (NCTC11044_00225) - 240574..242568 (+) 1995 WP_232012201.1 FtsX-like permease family protein -
  EL082_RS01090 (NCTC11044_00226) - 242691..243722 (+) 1032 WP_103286224.1 DUF4064 domain-containing protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25499.62 Da        Isoelectric Point: 4.9722

>NTDB_id=1119633 EL082_RS01070 WP_047211221.1 238139..238804(+) (braR) [Staphylococcus warneri strain NCTC11044]
MKILIVEDDLVIAESLASELKKWNYDVKMAKQFSHVLDDFKDYLPDLVLLDINLPTLNGFHWCQEMRKISNVPIIFISSR
TDNMDQIMAIQMGGDDFIEKPFNLSLTVAKVQALLRRTYDLAVSNNELNVKGCKLIVDEAKLMFQDDVTQLSLTELQIVK
LLFQNEGKFVNRTALIEKCWESENYIDDNTLAVNMTRLRKKLSQIGLTDFIETKKNVGYRV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1119633 EL082_RS01070 WP_047211221.1 238139..238804(+) (braR) [Staphylococcus warneri strain NCTC11044]
ATGAAGATTTTGATAGTAGAAGATGACTTAGTCATTGCAGAAAGTTTAGCAAGTGAACTTAAGAAATGGAACTATGACGT
TAAGATGGCAAAACAGTTTTCGCATGTTTTAGATGATTTCAAAGACTATCTACCTGACCTAGTACTACTAGATATTAATT
TACCAACTTTAAATGGCTTCCATTGGTGCCAAGAAATGAGAAAAATCTCAAACGTACCTATCATATTTATTAGTTCAAGG
ACAGATAATATGGATCAAATAATGGCGATTCAAATGGGTGGCGATGATTTTATTGAGAAACCATTTAATTTATCGTTAAC
AGTTGCTAAAGTACAAGCTTTATTACGACGAACTTATGATTTAGCTGTATCTAATAATGAATTAAATGTTAAGGGATGTA
AACTTATCGTTGATGAGGCTAAGTTAATGTTTCAAGATGATGTGACACAACTGTCTTTAACAGAACTTCAAATCGTTAAA
CTGTTGTTTCAAAATGAAGGTAAATTTGTAAATCGAACAGCTTTAATTGAAAAATGTTGGGAATCAGAGAATTATATTGA
TGATAATACTTTGGCTGTAAATATGACACGATTGCGAAAAAAATTAAGTCAAATTGGCTTAACAGATTTTATTGAAACGA
AGAAAAATGTGGGATATAGGGTGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-111)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(149-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

79.186

100

0.792

Multiple sequence alignment