Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   IX88_RS16950 Genome accession   NZ_CP009256
Coordinates   3592378..3592740 (-) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain AB31     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3587378..3597740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX88_RS16940 (IX88_17245) - 3589656..3591734 (-) 2079 WP_000505931.1 methyl-accepting chemotaxis protein -
  IX88_RS16945 (IX88_17250) - 3591781..3592317 (-) 537 WP_000729757.1 chemotaxis protein CheW -
  IX88_RS16950 (IX88_17255) pilH 3592378..3592740 (-) 363 WP_000101096.1 PleD family two-component system response regulator Machinery gene
  IX88_RS16955 (IX88_17260) pilG 3592764..3593147 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  IX88_RS16960 (IX88_17265) - 3593428..3594066 (+) 639 WP_002027721.1 hypothetical protein -
  IX88_RS16965 (IX88_17270) - 3594126..3595244 (+) 1119 WP_031379836.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=111963 IX88_RS16950 WP_000101096.1 3592378..3592740(-) (pilH) [Acinetobacter baumannii strain AB31]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=111963 IX88_RS16950 WP_000101096.1 3592378..3592740(-) (pilH) [Acinetobacter baumannii strain AB31]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCAGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392

Multiple sequence alignment