Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   EL085_RS03765 Genome accession   NZ_LR134267
Coordinates   856284..857000 (-) Length   238 a.a.
NCBI ID   WP_014613411.1    Uniprot ID   X2JA42
Organism   Staphylococcus pseudintermedius strain NCTC5661     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 851284..862000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL085_RS03745 - 852339..852453 (-) 115 Protein_743 ribose transporter RbsU -
  EL085_RS03750 (SAMEA3504576_00765) - 852789..853736 (+) 948 WP_063278589.1 LacI family DNA-binding transcriptional regulator -
  EL085_RS03755 (SAMEA3504576_00766) - 853792..855276 (+) 1485 WP_063285003.1 sucrose-6-phosphate hydrolase -
  EL085_RS03760 (SAMEA3504576_00767) - 855280..856224 (+) 945 WP_126510893.1 carbohydrate kinase -
  EL085_RS03765 (SAMEA3504576_00768) agrA 856284..857000 (-) 717 WP_014613411.1 LytTR family DNA-binding domain-containing protein Regulator
  EL085_RS12305 - 857014..857808 (-) 795 WP_226957586.1 ATP-binding protein -
  EL085_RS03775 (SAMEA3504576_00770) - 858329..858466 (-) 138 WP_019166405.1 cyclic lactone autoinducer peptide -
  EL085_RS03780 (SAMEA3504576_00771) - 858468..859034 (-) 567 WP_096636794.1 accessory gene regulator AgrB -
  EL085_RS03790 (SAMEA3504576_00773) - 859791..860594 (-) 804 WP_014613416.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 28002.15 Da        Isoelectric Point: 5.4331

>NTDB_id=1119603 EL085_RS03765 WP_014613411.1 856284..857000(-) (agrA) [Staphylococcus pseudintermedius strain NCTC5661]
MKILICEDDPKQRERMVSIIENYIMIEEKPMKIELATNDPYAILETSKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSYVLNRRNITSVDTKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1119603 EL085_RS03765 WP_014613411.1 856284..857000(-) (agrA) [Staphylococcus pseudintermedius strain NCTC5661]
ATGAAAATTTTGATTTGTGAGGATGATCCTAAACAACGCGAACGTATGGTGTCCATTATTGAAAACTATATTATGATTGA
AGAGAAGCCGATGAAAATTGAGCTTGCTACCAATGACCCTTATGCTATCTTAGAAACTTCTAAAAACATGACTGATATTG
GCTGCTACTTTTTAGATATTCAATTAGAGTCTGATATTAACGGGATTAAATTAGGGAGCGAAATTCGTAAGCACGATCCT
GTTGGGAATATTATTTTTGTGACGAGTCATAGTGAGCTGACGTACTTGACTTTTGTCTATAAAGTGGCTGCCATGGATTT
TATTTTTAAAGATGATCCTGAAGAATTAAGGACACGCATTATCGATTGTTTAGAAACAGCATTAAAACGGCTTGATTTAT
TAACAAAAGATCATACTGTTGAAACTTTGGAACTCAAACGTGGAACCAGCTCGGTTTACGTGAACTATGACGACGTGATG
TTTTTCGAGTCCTCACCGAAGTCACATCGTTTAATCGCGCATTTAGACAATCGTCAAATCGAATTTTACGGCAATTTGAA
AGAGTTAGCTCAACTCGATGATCGATTCTTCAGATGCCACAACAGTTATGTGCTAAACAGAAGAAATATTACAAGTGTCG
ATACGAAAGAACGGATTGCTTATTTCAAAAATGAAGAATTTTGTTACGTGTCGGTGCGTAATTTGAAGAAAATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(152-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X2JA42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

83.193

100

0.832

Multiple sequence alignment