Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | EL081_RS09405 | Genome accession | NZ_LR134266 |
| Coordinates | 1857642..1860071 (-) | Length | 809 a.a. |
| NCBI ID | WP_126404940.1 | Uniprot ID | - |
| Organism | Streptococcus viridans strain NCTC3166 | ||
| Function | degradation of ComW (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1852642..1865071
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL081_RS09375 (NCTC3166_01851) | - | 1853006..1853803 (-) | 798 | WP_126404935.1 | NUDIX domain-containing protein | - |
| EL081_RS09380 (NCTC3166_01852) | pnuC | 1853804..1854586 (-) | 783 | WP_126404936.1 | nicotinamide riboside transporter PnuC | - |
| EL081_RS09385 (NCTC3166_01853) | - | 1854599..1855657 (-) | 1059 | WP_126404937.1 | AAA family ATPase | - |
| EL081_RS09390 (NCTC3166_01854) | - | 1855860..1856594 (-) | 735 | WP_126404938.1 | hypothetical protein | - |
| EL081_RS09395 (NCTC3166_01855) | - | 1856757..1857161 (-) | 405 | WP_023024640.1 | DUF4430 domain-containing protein | - |
| EL081_RS09400 (NCTC3166_01856) | - | 1857142..1857630 (-) | 489 | WP_126404939.1 | ECF transporter S component | - |
| EL081_RS09405 (NCTC3166_01857) | clpC | 1857642..1860071 (-) | 2430 | WP_126404940.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| EL081_RS09410 (NCTC3166_01858) | - | 1860079..1860537 (-) | 459 | WP_126404941.1 | CtsR family transcriptional regulator | - |
| EL081_RS09415 (NCTC3166_01859) | - | 1860768..1864463 (-) | 3696 | WP_126404942.1 | alpha-L-fucosidase | - |
Sequence
Protein
Download Length: 809 a.a. Molecular weight: 89883.53 Da Isoelectric Point: 5.7046
>NTDB_id=1119588 EL081_RS09405 WP_126404940.1 1857642..1860071(-) (clpC) [Streptococcus viridans strain NCTC3166]
MNYSKALLETIEAAQILAGHFESQTLDTWHILVALANNPYSVAGSVLSDYPMQIDDFQDAAEHITGQVYQRDGRYEVFPF
SFRVEEIMKRSQEIAQAVHAKSLGTEHVLLALLLERGTLASQVLEYVGFRYDDQEEGIKIVELRKSLEQRAGWDKEAVKA
IRSLYRAQQPNRQTMGNMMGMPASTSGGLEDYTRDLTEMARNGSLEPVIGRGQEISRMIQILSRKTKNNPVLVGDAGVGK
TALALGLAQRIASGDVPTELAKMRVLELDLMNVVAGTRFRGDFEERMNNIINDIEEDGHVILFIDELHTIMGSGSGIDST
LDAANILKPALARGTLRTVGATTQEEYQKHIEKDAALSRRFAKVLIEQPSVADSIAILQGLKKTYERHHRVHITDAAIET
AVVYANRYLTSRLLPDSAIDLLDEAAATVQNEGPQAGLQSDLTAADQALLKGQWKKVAQLLKEDASPKGYQLEVKEEDIL
KTLSQLSGIPVEKLTQTAAKKYLELEAELHKRVIGQDQAVSSISRAIRRNQSGIRSHKRPIGSFLFLGPTGVGKTELAKA
LAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLLQVLDDG
VLTDSKGRKVDFSNTIIIMTSNLGATALRDDKTVGFGAKDIRFDQANMEKRIFEELKKTYRPEFINRIDEKVVFHSLTSD
QMHEIVKIMVKPLVQSLAEKGITLKFQASALKWLATHGYDPEMGARPLRRTIQTQVEDYLAEILLRGEVAEGQTLKVGVK
SGQLNFTID
MNYSKALLETIEAAQILAGHFESQTLDTWHILVALANNPYSVAGSVLSDYPMQIDDFQDAAEHITGQVYQRDGRYEVFPF
SFRVEEIMKRSQEIAQAVHAKSLGTEHVLLALLLERGTLASQVLEYVGFRYDDQEEGIKIVELRKSLEQRAGWDKEAVKA
IRSLYRAQQPNRQTMGNMMGMPASTSGGLEDYTRDLTEMARNGSLEPVIGRGQEISRMIQILSRKTKNNPVLVGDAGVGK
TALALGLAQRIASGDVPTELAKMRVLELDLMNVVAGTRFRGDFEERMNNIINDIEEDGHVILFIDELHTIMGSGSGIDST
LDAANILKPALARGTLRTVGATTQEEYQKHIEKDAALSRRFAKVLIEQPSVADSIAILQGLKKTYERHHRVHITDAAIET
AVVYANRYLTSRLLPDSAIDLLDEAAATVQNEGPQAGLQSDLTAADQALLKGQWKKVAQLLKEDASPKGYQLEVKEEDIL
KTLSQLSGIPVEKLTQTAAKKYLELEAELHKRVIGQDQAVSSISRAIRRNQSGIRSHKRPIGSFLFLGPTGVGKTELAKA
LAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLLQVLDDG
VLTDSKGRKVDFSNTIIIMTSNLGATALRDDKTVGFGAKDIRFDQANMEKRIFEELKKTYRPEFINRIDEKVVFHSLTSD
QMHEIVKIMVKPLVQSLAEKGITLKFQASALKWLATHGYDPEMGARPLRRTIQTQVEDYLAEILLRGEVAEGQTLKVGVK
SGQLNFTID
Nucleotide
Download Length: 2430 bp
>NTDB_id=1119588 EL081_RS09405 WP_126404940.1 1857642..1860071(-) (clpC) [Streptococcus viridans strain NCTC3166]
ATGAACTATTCAAAAGCCCTATTAGAAACGATTGAAGCCGCTCAAATCTTGGCGGGTCATTTTGAGTCCCAAACGCTAGA
TACCTGGCATATCCTAGTGGCCCTAGCCAATAATCCTTATAGTGTAGCTGGTTCCGTCTTAAGTGACTATCCTATGCAGA
TTGATGATTTTCAAGATGCGGCTGAGCACATTACGGGTCAAGTCTACCAACGGGATGGCCGCTATGAGGTATTTCCTTTT
TCTTTCCGTGTCGAAGAAATCATGAAACGTTCCCAAGAGATTGCCCAGGCAGTCCATGCCAAAAGTCTTGGAACAGAGCA
TGTCCTCTTGGCGCTTCTATTAGAGCGGGGGACCTTGGCTTCTCAAGTATTGGAGTATGTCGGCTTCCGCTATGATGATC
AGGAAGAGGGCATTAAAATCGTCGAGCTTCGTAAGAGCTTGGAACAACGAGCAGGTTGGGACAAGGAAGCTGTCAAGGCC
ATTCGTTCTCTCTATCGGGCCCAGCAACCCAATCGTCAAACCATGGGAAATATGATGGGCATGCCAGCCTCTACCAGCGG
TGGTTTGGAAGACTACACCCGAGATCTGACAGAAATGGCTCGCAATGGCAGTTTGGAACCGGTGATTGGTCGGGGTCAAG
AAATCTCGCGGATGATTCAGATTTTGAGCCGCAAAACGAAAAATAACCCGGTCCTGGTCGGTGATGCCGGTGTCGGAAAG
ACTGCTCTGGCTTTGGGCTTGGCCCAACGGATTGCCAGTGGAGATGTCCCGACGGAGCTGGCTAAGATGCGGGTCTTAGA
GTTGGACTTGATGAATGTTGTCGCAGGGACGCGGTTCCGTGGAGATTTTGAAGAGCGGATGAACAACATCATCAATGATA
TTGAAGAAGATGGCCATGTTATCCTCTTCATCGATGAGCTCCATACCATTATGGGATCTGGCTCTGGGATTGACTCTACC
TTGGATGCGGCCAATATCTTGAAGCCTGCCTTGGCTCGCGGCACCTTGCGGACCGTAGGAGCGACCACGCAAGAAGAATA
CCAAAAACACATTGAAAAAGACGCTGCTCTGTCACGCCGCTTTGCCAAGGTCTTGATTGAGCAACCCTCTGTTGCAGATA
GCATCGCGATTTTGCAAGGGCTCAAGAAGACCTATGAACGTCACCACCGCGTCCATATTACGGATGCGGCTATTGAGACA
GCTGTTGTCTATGCCAATCGTTATTTGACCAGTCGCCTCTTGCCTGACTCCGCCATTGACCTCTTGGATGAAGCAGCAGC
GACCGTGCAAAATGAGGGGCCTCAAGCCGGTCTTCAGTCCGACTTGACAGCTGCTGATCAAGCCTTGCTCAAGGGGCAGT
GGAAAAAAGTTGCTCAGTTGCTAAAAGAAGATGCCAGTCCAAAAGGCTACCAGCTAGAAGTCAAGGAAGAGGATATCCTG
AAGACGCTCAGTCAATTGTCAGGCATTCCTGTGGAGAAACTAACCCAAACAGCGGCTAAGAAATACCTTGAATTGGAAGC
AGAACTTCATAAGCGCGTGATCGGTCAGGATCAGGCTGTCTCAAGTATCAGCCGAGCGATCCGTCGTAATCAGTCGGGAA
TTCGGTCTCACAAGCGGCCGATTGGTTCCTTCCTCTTCCTCGGTCCGACTGGGGTCGGGAAAACCGAGCTTGCCAAGGCC
CTTGCAGAGGTCCTCTTTGATGATGAGTCTGCTTTGATCCGCTTTGACATGAGTGAATATATGGAGAAATTTGCGGCCAG
TCGTCTCAACGGTGCCCCTCCAGGCTATGTCGGTTATGAAGAAGGGGGCGAGTTGACGGAAAAAGTCCGCAACAAACCTT
ATTCAGTCCTCTTGTTTGATGAGGTGGAAAAAGCCCATCCAGATATCTTTAATGTTCTCTTGCAAGTCTTGGATGACGGT
GTCTTGACCGACAGCAAGGGACGCAAGGTGGACTTCTCTAATACGATTATAATCATGACCTCAAACTTGGGAGCTACCGC
TTTACGAGATGATAAGACAGTTGGCTTTGGCGCCAAGGATATTCGCTTTGACCAAGCCAATATGGAGAAACGCATCTTTG
AAGAGTTGAAGAAGACCTATCGACCAGAGTTTATCAACCGGATTGATGAGAAGGTTGTCTTCCATAGCTTGACCAGTGAC
CAAATGCATGAGATTGTCAAGATTATGGTGAAACCGCTGGTTCAATCTCTAGCAGAGAAGGGCATTACTCTGAAATTCCA
AGCGTCTGCTCTTAAATGGCTGGCGACTCACGGATATGATCCAGAGATGGGAGCACGTCCTTTGCGCCGGACCATCCAGA
CCCAGGTGGAAGACTACTTGGCAGAGATCCTCTTGAGAGGAGAAGTGGCTGAAGGGCAAACCCTCAAGGTAGGTGTTAAG
TCTGGTCAGCTTAACTTTACGATTGACTAG
ATGAACTATTCAAAAGCCCTATTAGAAACGATTGAAGCCGCTCAAATCTTGGCGGGTCATTTTGAGTCCCAAACGCTAGA
TACCTGGCATATCCTAGTGGCCCTAGCCAATAATCCTTATAGTGTAGCTGGTTCCGTCTTAAGTGACTATCCTATGCAGA
TTGATGATTTTCAAGATGCGGCTGAGCACATTACGGGTCAAGTCTACCAACGGGATGGCCGCTATGAGGTATTTCCTTTT
TCTTTCCGTGTCGAAGAAATCATGAAACGTTCCCAAGAGATTGCCCAGGCAGTCCATGCCAAAAGTCTTGGAACAGAGCA
TGTCCTCTTGGCGCTTCTATTAGAGCGGGGGACCTTGGCTTCTCAAGTATTGGAGTATGTCGGCTTCCGCTATGATGATC
AGGAAGAGGGCATTAAAATCGTCGAGCTTCGTAAGAGCTTGGAACAACGAGCAGGTTGGGACAAGGAAGCTGTCAAGGCC
ATTCGTTCTCTCTATCGGGCCCAGCAACCCAATCGTCAAACCATGGGAAATATGATGGGCATGCCAGCCTCTACCAGCGG
TGGTTTGGAAGACTACACCCGAGATCTGACAGAAATGGCTCGCAATGGCAGTTTGGAACCGGTGATTGGTCGGGGTCAAG
AAATCTCGCGGATGATTCAGATTTTGAGCCGCAAAACGAAAAATAACCCGGTCCTGGTCGGTGATGCCGGTGTCGGAAAG
ACTGCTCTGGCTTTGGGCTTGGCCCAACGGATTGCCAGTGGAGATGTCCCGACGGAGCTGGCTAAGATGCGGGTCTTAGA
GTTGGACTTGATGAATGTTGTCGCAGGGACGCGGTTCCGTGGAGATTTTGAAGAGCGGATGAACAACATCATCAATGATA
TTGAAGAAGATGGCCATGTTATCCTCTTCATCGATGAGCTCCATACCATTATGGGATCTGGCTCTGGGATTGACTCTACC
TTGGATGCGGCCAATATCTTGAAGCCTGCCTTGGCTCGCGGCACCTTGCGGACCGTAGGAGCGACCACGCAAGAAGAATA
CCAAAAACACATTGAAAAAGACGCTGCTCTGTCACGCCGCTTTGCCAAGGTCTTGATTGAGCAACCCTCTGTTGCAGATA
GCATCGCGATTTTGCAAGGGCTCAAGAAGACCTATGAACGTCACCACCGCGTCCATATTACGGATGCGGCTATTGAGACA
GCTGTTGTCTATGCCAATCGTTATTTGACCAGTCGCCTCTTGCCTGACTCCGCCATTGACCTCTTGGATGAAGCAGCAGC
GACCGTGCAAAATGAGGGGCCTCAAGCCGGTCTTCAGTCCGACTTGACAGCTGCTGATCAAGCCTTGCTCAAGGGGCAGT
GGAAAAAAGTTGCTCAGTTGCTAAAAGAAGATGCCAGTCCAAAAGGCTACCAGCTAGAAGTCAAGGAAGAGGATATCCTG
AAGACGCTCAGTCAATTGTCAGGCATTCCTGTGGAGAAACTAACCCAAACAGCGGCTAAGAAATACCTTGAATTGGAAGC
AGAACTTCATAAGCGCGTGATCGGTCAGGATCAGGCTGTCTCAAGTATCAGCCGAGCGATCCGTCGTAATCAGTCGGGAA
TTCGGTCTCACAAGCGGCCGATTGGTTCCTTCCTCTTCCTCGGTCCGACTGGGGTCGGGAAAACCGAGCTTGCCAAGGCC
CTTGCAGAGGTCCTCTTTGATGATGAGTCTGCTTTGATCCGCTTTGACATGAGTGAATATATGGAGAAATTTGCGGCCAG
TCGTCTCAACGGTGCCCCTCCAGGCTATGTCGGTTATGAAGAAGGGGGCGAGTTGACGGAAAAAGTCCGCAACAAACCTT
ATTCAGTCCTCTTGTTTGATGAGGTGGAAAAAGCCCATCCAGATATCTTTAATGTTCTCTTGCAAGTCTTGGATGACGGT
GTCTTGACCGACAGCAAGGGACGCAAGGTGGACTTCTCTAATACGATTATAATCATGACCTCAAACTTGGGAGCTACCGC
TTTACGAGATGATAAGACAGTTGGCTTTGGCGCCAAGGATATTCGCTTTGACCAAGCCAATATGGAGAAACGCATCTTTG
AAGAGTTGAAGAAGACCTATCGACCAGAGTTTATCAACCGGATTGATGAGAAGGTTGTCTTCCATAGCTTGACCAGTGAC
CAAATGCATGAGATTGTCAAGATTATGGTGAAACCGCTGGTTCAATCTCTAGCAGAGAAGGGCATTACTCTGAAATTCCA
AGCGTCTGCTCTTAAATGGCTGGCGACTCACGGATATGATCCAGAGATGGGAGCACGTCCTTTGCGCCGGACCATCCAGA
CCCAGGTGGAAGACTACTTGGCAGAGATCCTCTTGAGAGGAGAAGTGGCTGAAGGGCAAACCCTCAAGGTAGGTGTTAAG
TCTGGTCAGCTTAACTTTACGATTGACTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Streptococcus pneumoniae Rx1 |
76.514 |
100 |
0.765 |
| clpC | Streptococcus pneumoniae D39 |
76.514 |
100 |
0.765 |
| clpC | Streptococcus pneumoniae TIGR4 |
76.514 |
100 |
0.765 |
| clpC | Streptococcus mutans UA159 |
66.626 |
100 |
0.669 |
| clpC | Streptococcus thermophilus LMD-9 |
65.116 |
100 |
0.658 |
| clpC | Streptococcus thermophilus LMG 18311 |
65.116 |
100 |
0.658 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
48.798 |
100 |
0.502 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
45.556 |
100 |
0.456 |
| clpE | Streptococcus mutans UA159 |
48.796 |
77.009 |
0.376 |
| clpE | Streptococcus pneumoniae Rx1 |
47.512 |
77.009 |
0.366 |
| clpE | Streptococcus pneumoniae D39 |
47.512 |
77.009 |
0.366 |
| clpE | Streptococcus pneumoniae R6 |
47.512 |
77.009 |
0.366 |
| clpE | Streptococcus pneumoniae TIGR4 |
47.512 |
77.009 |
0.366 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
45.794 |
79.357 |
0.363 |