Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EL081_RS09235 Genome accession   NZ_LR134266
Coordinates   1823067..1824428 (-) Length   453 a.a.
NCBI ID   WP_126404919.1    Uniprot ID   -
Organism   Streptococcus viridans strain NCTC3166     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1818067..1829428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL081_RS09220 (NCTC3166_01823) - 1819461..1821476 (-) 2016 WP_232011419.1 DUF2079 domain-containing protein -
  EL081_RS09225 (NCTC3166_01824) - 1821646..1822143 (-) 498 WP_023024580.1 carbonic anhydrase -
  EL081_RS09230 (NCTC3166_01825) - 1822290..1822985 (-) 696 WP_023024583.1 TIGR00266 family protein -
  EL081_RS09235 (NCTC3166_01826) radA 1823067..1824428 (-) 1362 WP_126404919.1 DNA repair protein RadA Machinery gene
  EL081_RS09240 (NCTC3166_01827) - 1824442..1824981 (-) 540 WP_126404920.1 histidine phosphatase family protein -
  EL081_RS09245 (NCTC3166_01828) - 1824983..1825429 (-) 447 WP_126405079.1 dUTP diphosphatase -
  EL081_RS09250 (NCTC3166_01829) - 1825667..1826356 (-) 690 WP_125329260.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49306.78 Da        Isoelectric Point: 6.6504

>NTDB_id=1119587 EL081_RS09235 WP_126404919.1 1823067..1824428(-) (radA) [Streptococcus viridans strain NCTC3166]
MAKKKTTFICQNCAYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLADVTSINVHRTKTEMEEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVE
RIQPNFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNSLQGIAIPNGIQVIAVSTVGEVLKRVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1119587 EL081_RS09235 WP_126404919.1 1823067..1824428(-) (radA) [Streptococcus viridans strain NCTC3166]
ATCGCTAAGAAAAAAACGACATTTATTTGTCAAAATTGTGCCTACAATTCACCTAAGTATCTAGGGCGCTGTCCTAACTG
TGGTTCTTGGTCTTCTTTTGTCGAGGAGGTTGAGGTCGCCGAGGTCAAGAATGCCCGTGTGTCCTTGACAGGTGAGAAAA
CCAAGCCCATGAAACTGGCGGATGTGACCTCTATCAATGTCCATCGTACCAAGACGGAAATGGAGGAATTCAACCGCGTC
CTTGGAGGTGGTGTCGTCCCAGGAAGTCTCGTCCTCATCGGGGGAGATCCAGGGATTGGGAAGTCTACTCTCCTCCTTCA
AGTATCGACCCAACTATCTCAAGTGGGAACAGTTCTCTATGTCAGTGGCGAGGAGTCGGCCCAGCAGATCAAGTTACGGG
CAGAGCGCTTGGGGGATATCGATAGCGAGTTTTACCTCTATGCTGAGACCAATATGCAAAGCGTGCGTGCGGAAGTGGAA
CGCATCCAGCCTAACTTCCTTATCATCGACTCCATCCAGACCATTATGTCTCCGGAGATTTCAGGGGTACAGGGATCGGT
TTCTCAGGTGCGCGAGGTGACGGCTGAGCTCATGCAGCTGGCCAAAACCAATAACATCGCCATCTTTATCGTCGGTCATG
TGACCAAGGAAGGAACCTTGGCGGGCCCGCGTATGCTGGAGCACATGGTGGATACGGTGCTCTACTTTGAGGGGGAACGC
CACCACACCTTCCGGATCCTGAGAGCGGTGAAAAATCGCTTTGGCTCGACCAATGAGATTGGAATCTTTGAGATGCAATC
AGGTGGACTGGTCGAAGTCCTCAATCCCAGTCAGGTCTTTCTAGAAGAACGTTTGGATGGGGCGACTGGCTCTGCCATTG
TCGTCACCATGGAAGGAAGTAGACCAATCTTGGCGGAAGTTCAGGCCTTGGTGACACCGACTGTATTTGGAAATGCCAAG
CGGACGACAACGGGTCTTGACTTTAATCGGGTCAGCCTCATCATGGCTGTGTTAGAGAAACGTTGCGGACTTCTTCTCCA
AAATCAGGATGCCTATCTCAAGTCAGCTGGTGGTGTCAAACTGGACGAACCAGCCATTGACTTAGCCGTAGCGGTGGCCA
TTGCTTCTAGCTACAAGGAGCTTCCAACCAATCCTCAAGAGGCCTTTATCGGTGAGATTGGCTTGACTGGGGAGATTCGT
CGCGTGACTCGGATTGAGCAACGGATCAACGAAGCGGCTAAACTTGGCTTCACTAAGATTTATGCGCCAAAAAATTCTCT
CCAAGGCATCGCGATCCCAAATGGCATTCAAGTGATAGCTGTCTCTACTGTAGGAGAGGTTCTTAAAAGAGTCTTTTCTT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(65-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

93.598

100

0.936
  radA Streptococcus pneumoniae D39

93.598

100

0.936
  radA Streptococcus pneumoniae R6

93.598

100

0.936
  radA Streptococcus pneumoniae TIGR4

93.598

100

0.936
  radA Streptococcus mitis SK321

93.598

100

0.936
  radA Streptococcus mitis NCTC 12261

93.377

100

0.934
  radA Bacillus subtilis subsp. subtilis str. 168

62.472

100

0.625

Multiple sequence alignment