Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptA   Type   Regulator
Locus tag   EL081_RS02340 Genome accession   NZ_LR134266
Coordinates   420294..421025 (+) Length   243 a.a.
NCBI ID   WP_126403820.1    Uniprot ID   -
Organism   Streptococcus viridans strain NCTC3166     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 415294..426025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL081_RS02310 (NCTC3166_00464) - 415747..417168 (+) 1422 WP_126403814.1 NCS2 family permease -
  EL081_RS02315 (NCTC3166_00465) tsaE 417290..417739 (+) 450 WP_126403815.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  EL081_RS02320 (NCTC3166_00466) - 417742..418275 (+) 534 WP_126403816.1 GNAT family protein -
  EL081_RS02325 (NCTC3166_00467) - 418272..419444 (+) 1173 WP_126403817.1 LCP family protein -
  EL081_RS02330 (NCTC3166_00468) - 419503..419799 (-) 297 WP_126403818.1 hypothetical protein -
  EL081_RS02335 (NCTC3166_00469) - 419813..420226 (-) 414 WP_126403819.1 HIT family protein -
  EL081_RS02340 (NCTC3166_00470) pptA 420294..421025 (+) 732 WP_126403820.1 ABC transporter ATP-binding protein Regulator
  EL081_RS02345 (NCTC3166_00471) - 421022..422077 (+) 1056 WP_126403821.1 ABC transporter permease -
  EL081_RS02350 (NCTC3166_00472) - 422118..422912 (+) 795 WP_023022280.1 phosphotransferase family protein -
  EL081_RS02355 (NCTC3166_00473) trmB 422909..423544 (+) 636 WP_126403822.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  EL081_RS02360 (NCTC3166_00474) rimP 423710..424198 (+) 489 WP_185759948.1 ribosome maturation factor RimP -
  EL081_RS02365 (NCTC3166_00475) nusA 424244..425389 (+) 1146 WP_023022285.1 transcription termination factor NusA -
  EL081_RS02370 (NCTC3166_00476) - 425400..425696 (+) 297 WP_126403823.1 YlxR family protein -
  EL081_RS02375 (NCTC3166_00477) - 425689..425988 (+) 300 WP_126403824.1 YlxQ-related RNA-binding protein -

Sequence


Protein


Download         Length: 243 a.a.        Molecular weight: 27001.37 Da        Isoelectric Point: 4.6428

>NTDB_id=1119561 EL081_RS02340 WP_126403820.1 420294..421025(+) (pptA) [Streptococcus viridans strain NCTC3166]
MLEIKNLTGGYVNIPVLKDVSFEVGDGQLIGLIGLNGAGKSTTINEIIGLLRPYAGEIRIDGLTLATSPSAYRQKIGYIP
ETPSLYEELTLREHIETVAMAYDLDQEAVFARVTPLLKQFRLEEKLDWFPVHFSKGMKQKVMIICAFAVDPSLFIVDEPF
LGLDPVAISDLIQLLKVEKEKGKSILMSTHVLDSAEKMCDAFVILHKGQVRAQGTLEELRTEFGMADADLNEIYLALTKE
ADR

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1119561 EL081_RS02340 WP_126403820.1 420294..421025(+) (pptA) [Streptococcus viridans strain NCTC3166]
ATGTTAGAAATAAAAAACCTGACAGGAGGCTATGTCAATATCCCTGTCTTGAAAGATGTTAGTTTTGAGGTTGGCGATGG
TCAATTAATTGGATTGATTGGCTTGAATGGAGCAGGGAAATCAACGACCATAAATGAAATTATAGGTCTACTGCGTCCCT
ATGCTGGCGAAATCCGGATCGATGGTTTGACTTTAGCTACTTCTCCAAGTGCTTATCGCCAAAAAATTGGTTATATTCCT
GAAACACCGAGCCTTTATGAGGAGTTAACCCTGCGTGAGCATATTGAGACAGTGGCGATGGCCTATGACTTGGATCAGGA
AGCAGTTTTTGCGCGTGTGACTCCTCTCTTGAAGCAATTTCGACTAGAGGAAAAATTGGATTGGTTTCCTGTCCATTTTT
CTAAGGGGATGAAACAAAAGGTCATGATTATTTGTGCCTTTGCTGTTGATCCAAGTTTGTTTATTGTCGACGAGCCTTTC
TTAGGTTTGGATCCAGTTGCGATCTCAGATTTAATTCAATTATTGAAGGTGGAAAAAGAGAAGGGGAAATCTATTTTAAT
GAGTACCCATGTGCTGGATTCTGCTGAAAAAATGTGTGATGCCTTTGTCATTCTTCATAAGGGGCAGGTCCGTGCTCAGG
GGACTTTAGAGGAATTGCGGACAGAATTTGGAATGGCAGATGCCGATTTGAATGAAATTTACCTTGCACTAACAAAAGAG
GCGGACCGATGA

Domains


Predicted by InterproScan.

(17-160)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

76.151

98.354

0.749

  pptA Streptococcus thermophilus LMD-9

75.314

98.354

0.741


Multiple sequence alignment