Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   EL081_RS01735 Genome accession   NZ_LR134266
Coordinates   305146..307251 (+) Length   701 a.a.
NCBI ID   WP_126403755.1    Uniprot ID   -
Organism   Streptococcus viridans strain NCTC3166     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 300146..312251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL081_RS01705 (NCTC3166_00341) - 300349..300549 (+) 201 WP_126403750.1 hypothetical protein -
  EL081_RS01710 (NCTC3166_00342) - 300649..301650 (+) 1002 WP_126403751.1 uroporphyrinogen decarboxylase family protein -
  EL081_RS01715 (NCTC3166_00343) - 301678..302556 (+) 879 WP_126403752.1 transporter substrate-binding domain-containing protein -
  EL081_RS01720 (NCTC3166_00344) - 302622..303314 (+) 693 WP_126403753.1 amino acid ABC transporter permease -
  EL081_RS01725 (NCTC3166_00345) - 303318..304004 (+) 687 WP_009732142.1 amino acid ABC transporter permease -
  EL081_RS01730 (NCTC3166_00346) - 304024..304788 (+) 765 WP_126403754.1 amino acid ABC transporter ATP-binding protein -
  EL081_RS01735 (NCTC3166_00347) clpC 305146..307251 (+) 2106 WP_126403755.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  EL081_RS01740 (NCTC3166_00348) - 307544..307789 (+) 246 WP_006595034.1 hypothetical protein -
  EL081_RS01745 (NCTC3166_00349) yajC 307977..308306 (+) 330 WP_126403756.1 preprotein translocase subunit YajC -
  EL081_RS01750 (NCTC3166_00350) - 308439..309188 (+) 750 WP_126403757.1 isoprenyl transferase -
  EL081_RS01755 (NCTC3166_00351) - 309200..310003 (+) 804 WP_006595031.1 phosphatidate cytidylyltransferase -
  EL081_RS01760 (NCTC3166_00352) eeP 310045..311304 (+) 1260 WP_006595030.1 RIP metalloprotease RseP Regulator

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 77590.42 Da        Isoelectric Point: 4.7168

>NTDB_id=1119552 EL081_RS01735 WP_126403755.1 305146..307251(+) (clpC) [Streptococcus viridans strain NCTC3166]
MNNNFNNMDDLFNQLMGNMGGFRSESRRYMINGREVTPEEFAIYRQTGQLPNEGSEQVQQQQGKGMKQDGILAKLGRNLT
EEAREGKLDPVIGRNKEIQETAEILSRRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEAGT
QYRGSFEENIQNMIQEVKAMGNVILFFDEIHQILGAGSTGDGQGSKGLADILKPALSRGELTVIGATTQDEYRNTILKNA
ALARRFNEVKVNAPSAEDTFKILQGIRDLYEKHHNVVLPDEVLKAAVDYSVQYIPQRSLPDKAIDLVDVTAAHLAAQHPV
TDVHAVEHEIQAEKTKQEEAAAKEDYEAALNAKVRIEELEKQIANHTEDHKVTATVNDVAESVERMTGIPVSQMGATDIE
RLKDMGHRLQTKVIGQDKAVEAVSKAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDMFGTKDAIIRLDMSEY
SDRTAVSKLIGTTAGYVGYDDNNNTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIA
TSNAGFGYEANLTEDADKPELMDRLKPFFRPEFLNRFNAVIEFSHLSKEDLSKIVDLMLVEVNKTLAKKDIDLTVSDAAK
EYMTEEGYDEVMGVRPLRRVVEQQIRDKVTDFHLDNLDAKHLLADMEDGELVIKESGNSEE

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=1119552 EL081_RS01735 WP_126403755.1 305146..307251(+) (clpC) [Streptococcus viridans strain NCTC3166]
ATGAACAACAACTTTAACAATATGGATGATCTTTTCAATCAACTAATGGGAAACATGGGTGGTTTTCGTTCTGAAAGCCG
TCGCTACATGATTAATGGTCGTGAAGTGACACCGGAAGAATTCGCCATTTACCGCCAAACGGGTCAACTTCCAAATGAAG
GAAGTGAGCAAGTGCAACAGCAACAAGGCAAAGGGATGAAACAAGATGGAATCCTTGCAAAACTGGGCCGTAACTTGACC
GAAGAAGCCCGTGAAGGAAAATTGGATCCGGTCATCGGACGCAACAAAGAAATTCAAGAAACGGCTGAAATCCTGTCTCG
TCGTACCAAGAACAACCCTGTCCTTGTAGGGGATGCAGGTGTTGGTAAGACAGCTGTTGTAGAAGGATTGGCTCAAGCTA
TCGTGAACGGTGATGTTCCAGCAGCCATCAAGAACAAAGAAATCATCTCGATTGATATTTCTGGTCTAGAAGCTGGTACG
CAATACCGTGGTAGCTTTGAAGAAAATATCCAAAATATGATCCAAGAAGTCAAAGCCATGGGCAATGTCATCCTCTTCTT
TGACGAAATCCACCAAATTCTTGGTGCGGGCAGCACAGGGGATGGTCAAGGATCAAAAGGTCTTGCGGATATCTTGAAAC
CAGCTCTTTCTCGTGGGGAATTGACAGTCATTGGTGCAACTACTCAAGATGAATACCGTAACACCATCTTGAAGAATGCG
GCCCTTGCTCGTCGTTTCAACGAAGTCAAGGTTAATGCTCCATCAGCTGAAGATACTTTCAAGATTCTCCAAGGGATCCG
TGATCTTTACGAAAAACACCACAATGTTGTTTTGCCAGATGAAGTCTTGAAAGCAGCAGTTGATTATTCTGTTCAATACA
TTCCACAACGTAGCTTGCCTGATAAGGCGATTGACTTGGTCGATGTGACAGCTGCTCACTTGGCAGCTCAACACCCTGTA
ACAGATGTACATGCGGTTGAGCACGAAATTCAAGCGGAAAAAACTAAACAAGAAGAAGCTGCGGCTAAAGAAGATTACGA
AGCAGCTCTAAATGCAAAAGTCCGTATCGAAGAGCTTGAAAAGCAAATTGCTAACCATACAGAAGATCACAAGGTGACTG
CAACTGTCAATGACGTAGCTGAGTCTGTCGAACGAATGACTGGAATCCCAGTATCACAAATGGGGGCTACGGACATCGAA
CGTTTGAAAGATATGGGTCACCGTTTGCAAACGAAAGTTATCGGTCAAGACAAAGCCGTTGAAGCTGTTTCAAAAGCGAT
CCGTCGGAACCGTGCAGGGTTTGATGAAGGTAACCGTCCAATCGGTAGCTTCCTCTTCGTCGGACCTACTGGTGTTGGTA
AAACAGAGTTGGCTAAACAATTAGCCCTTGATATGTTCGGTACTAAAGATGCCATCATCCGTTTGGACATGTCAGAATAT
AGCGACCGTACAGCCGTATCTAAATTGATCGGTACAACTGCAGGTTATGTAGGTTACGATGACAACAACAATACATTAAC
TGAACGCGTCCGTCGTAATCCATATTCAATCGTCCTTCTTGATGAGATTGAAAAAGCGGATCCTCAAGTGATCACCCTTC
TTCTTCAAGTCTTGGATGATGGTCGTTTGACAGACGGTCAAGGGAACACGGTCAACTTCAAGAATACAGTGATTATCGCC
ACTTCAAACGCTGGCTTTGGTTACGAAGCGAACTTGACAGAAGATGCGGACAAGCCAGAACTCATGGATCGTTTGAAACC
ATTCTTCCGTCCAGAATTCTTGAACCGCTTTAATGCAGTGATCGAATTCTCACACTTGAGCAAGGAAGACCTTTCTAAGA
TTGTTGACTTGATGTTAGTAGAAGTGAACAAAACTCTTGCTAAGAAAGACATCGACTTGACAGTGAGCGATGCTGCCAAA
GAATACATGACTGAAGAAGGATATGATGAAGTTATGGGTGTTCGTCCACTCCGTCGTGTGGTTGAACAACAAATCCGAGA
TAAAGTGACAGACTTCCACTTGGATAATCTTGATGCTAAACACTTGCTAGCAGATATGGAAGATGGAGAATTGGTTATTA
AAGAGAGTGGAAACTCAGAAGAATAA

Domains

Predicted by InterproScan.

AAA lid domain (AAA_lid_9)

(255-350)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(606-676)

ATPase family associated with various cellular activities (AAA) (AAA)

(114-246)

AAA domain (Cdc48 subfamily) (AAA_2)

(439-599)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

48.42

99.287

0.481
  clpE Streptococcus mutans UA159

47.727

100

0.479
  clpE Streptococcus pneumoniae Rx1

47.994

92.439

0.444
  clpE Streptococcus pneumoniae D39

47.994

92.439

0.444
  clpE Streptococcus pneumoniae R6

47.994

92.439

0.444
  clpE Streptococcus pneumoniae TIGR4

48.05

91.441

0.439
  clpC Bacillus subtilis subsp. subtilis str. 168

45.789

93.153

0.427
  clpC Streptococcus pneumoniae D39

42.462

92.725

0.394
  clpC Streptococcus pneumoniae Rx1

42.462

92.725

0.394
  clpC Streptococcus pneumoniae TIGR4

42.308

92.725

0.392
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

42.812

90.3

0.387
  clpC Streptococcus thermophilus LMD-9

43.78

88.302

0.387
  clpC Streptococcus thermophilus LMG 18311

43.619

88.302

0.385
  clpC Streptococcus mutans UA159

42.557

88.16

0.375

Multiple sequence alignment