Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EL071_RS07450 Genome accession   NZ_LR134265
Coordinates   1428031..1429836 (+) Length   601 a.a.
NCBI ID   WP_115356808.1    Uniprot ID   A0AB38VLZ1
Organism   Streptococcus agalactiae strain NCTC8184     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1423031..1434836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL071_RS07420 (NCTC8184_01474) nagB 1423248..1423958 (+) 711 WP_001263958.1 glucosamine-6-phosphate deaminase -
  EL071_RS07425 (NCTC8184_01475) - 1424021..1424977 (-) 957 WP_000523783.1 glutathione S-transferase family protein -
  EL071_RS07430 (NCTC8184_01476) - 1425073..1425792 (+) 720 WP_001234964.1 pseudouridine synthase -
  EL071_RS07440 (NCTC8184_01477) - 1425865..1427016 (+) 1152 WP_001086198.1 MFS transporter -
  EL071_RS07445 (NCTC8184_01478) coiA 1427068..1428015 (+) 948 WP_000903651.1 competence protein CoiA family protein Machinery gene
  EL071_RS07450 (NCTC8184_01479) pepF 1428031..1429836 (+) 1806 WP_115356808.1 oligoendopeptidase F Regulator
  EL071_RS07455 (NCTC8184_01480) - 1430031..1430657 (+) 627 WP_115356809.1 HAD-IA family hydrolase -
  EL071_RS07460 (NCTC8184_01481) - 1430731..1431438 (+) 708 WP_000250853.1 O-methyltransferase -
  EL071_RS07465 (NCTC8184_01482) prsA 1431499..1432428 (+) 930 WP_000857818.1 peptidylprolyl isomerase PrsA -
  EL071_RS07470 (NCTC8184_01484) - 1432670..1433155 (+) 486 WP_000190192.1 LURP-one-related family protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69645.61 Da        Isoelectric Point: 4.6017

>NTDB_id=1119513 EL071_RS07450 WP_115356808.1 1428031..1429836(+) (pepF) [Streptococcus agalactiae strain NCTC8184]
MSDNRSYIEEKYQWDLTTVFATDELWETEVVELTQAIDDAKGFSGHLLDSSQSLLEITEVELELSRRLEKVYVYASMKND
QDTTVAKYQEFQAKATALYAKFSETFSFYEPELLQLSESDYQSFLLEMPDLQKYDHFFEKIFANKPHVLSQNEEELLAGA
SEIFGAAGETFEILDNADMVFPVVKNAKGEEVELTHGNFISLMESSDRTVRKEAYQAMYSTYEQFQHTYAKTLQTNVKSQ
NFKARVHHYQSARQSALSANFIPEEVYETLIKTVNHHLPLLHRYMKLRQKVLGLDDLKMYDVYTPLSQMDMSFTYDEALK
KSEEVLAIFGEAYSERVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTETLLKEVKDDKNRFAILNHYLDGFKGTIFRQTQFAEFEHAIHVADQEGQVLTSEY
LNNLYAELNEKYYGLTKEDNHFIQYEWARIPHFYYNYYVFQYATGFAAANYLAERIVNGNPEDKEAYLNYLKAGNSDYPL
NVIAKAGVDMTSADYLDAAFRVFEERLVELENLVAKGVHND

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=1119513 EL071_RS07450 WP_115356808.1 1428031..1429836(+) (pepF) [Streptococcus agalactiae strain NCTC8184]
ATGTCAGACAATCGCTCATATATTGAAGAAAAATACCAATGGGATTTAACTACTGTCTTTGCGACTGATGAGTTATGGGA
AACTGAAGTGGTAGAGCTTACTCAAGCCATCGATGACGCAAAGGGTTTTTCAGGTCATCTGTTGGACTCAAGCCAATCTT
TATTGGAGATTACGGAGGTTGAACTAGAGTTATCTCGCCGTTTAGAAAAAGTTTATGTCTATGCTTCAATGAAAAATGAC
CAAGACACCACTGTTGCGAAATATCAAGAATTTCAAGCAAAAGCGACAGCGCTCTATGCAAAATTTAGTGAAACATTTTC
GTTTTACGAGCCAGAACTATTGCAACTTTCAGAGTCTGATTACCAGTCATTCCTTTTAGAAATGCCTGACTTGCAAAAAT
ATGATCATTTCTTTGAGAAAATATTTGCAAATAAACCTCATGTCTTATCTCAAAACGAAGAAGAATTGTTAGCTGGTGCT
AGTGAGATTTTTGGAGCAGCTGGTGAGACATTTGAAATCCTTGATAATGCAGATATGGTCTTCCCAGTTGTAAAAAATGC
AAAAGGTGAGGAAGTTGAGCTTACACATGGTAATTTCATTTCCCTTATGGAATCTAGCGATAGGACGGTTCGAAAAGAAG
CATATCAAGCTATGTATAGCACATATGAACAATTCCAGCATACTTACGCTAAAACATTACAAACAAATGTGAAATCTCAA
AATTTTAAAGCTCGTGTGCATCATTATCAATCAGCACGCCAATCAGCTCTATCTGCCAATTTTATTCCAGAAGAGGTCTA
CGAAACTCTAATTAAGACAGTTAATCATCATTTACCGCTCTTACATCGTTATATGAAGTTGCGTCAAAAAGTTCTTGGGC
TAGATGATTTGAAGATGTATGACGTATATACACCCCTTTCTCAAATGGATATGAGTTTTACTTATGATGAAGCTCTAAAA
AAATCAGAGGAGGTTCTGGCTATTTTTGGCGAAGCATATTCTGAACGTGTTCATCGTGCTTTTACTGAACGTTGGATTGA
TGTCCATGTTAACAAAGGAAAGAGGTCAGGCGCTTATTCAGGTGGATCTTATGACACTAATGCTTTCATGCTTCTTAACT
GGCAAGATACTTTAGACAATCTTTATACGCTGGTGCATGAAACTGGACATAGTCTACACTCGACGTTTACTCGTGAAAAT
CAACCCTATGTTTATGGTGATTATTCTATTTTCCTAGCTGAAATTGCATCAACAACAAATGAAAATATATTAACAGAAAC
CCTTTTGAAAGAAGTTAAAGATGATAAAAATCGCTTTGCAATTCTCAATCATTATTTGGACGGTTTCAAAGGAACAATTT
TTAGACAAACACAGTTCGCTGAATTCGAACATGCCATTCATGTAGCTGATCAGGAGGGGCAAGTACTAACTAGCGAATAC
TTAAACAACCTTTACGCTGAGCTTAATGAAAAATATTATGGTTTGACTAAAGAAGATAATCATTTTATTCAATATGAATG
GGCAAGAATTCCACACTTTTACTACAATTATTATGTTTTCCAATATGCAACCGGCTTCGCAGCAGCAAATTATTTAGCAG
AGCGTATTGTAAACGGTAATCCGGAGGATAAAGAGGCCTACCTAAATTACCTTAAAGCTGGGAATTCAGATTACCCTCTA
AACGTCATTGCTAAAGCCGGTGTTGATATGACTAGTGCAGACTATCTGGATGCAGCTTTTAGAGTATTTGAAGAGCGTTT
AGTGGAACTGGAAAATCTTGTAGCAAAAGGCGTCCATAATGATTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71.285

99.667

0.71

Multiple sequence alignment