Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   EL095_RS04830 Genome accession   NZ_LR134264
Coordinates   1073857..1074900 (+) Length   347 a.a.
NCBI ID   WP_002481663.1    Uniprot ID   -
Organism   Staphylococcus simulans strain NCTC7944     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1068857..1079900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL095_RS04805 (SAMEA3500277_00985) - 1069860..1070579 (+) 720 WP_023015863.1 glutamine amidotransferase -
  EL095_RS04810 (SAMEA3500277_00986) - 1070662..1071648 (-) 987 WP_002481667.1 aromatic acid exporter family protein -
  EL095_RS04815 (SAMEA3500277_00987) map 1071868..1072632 (+) 765 WP_060803962.1 type I methionyl aminopeptidase -
  EL095_RS04820 (SAMEA3500277_00988) - 1072748..1073143 (+) 396 WP_002481665.1 hypothetical protein -
  EL095_RS04825 (SAMEA3500277_00989) liaF 1073159..1073860 (+) 702 WP_002481664.1 cell wall-active antibiotics response protein LiaF -
  EL095_RS04830 (SAMEA3500277_00990) vraS 1073857..1074900 (+) 1044 WP_002481663.1 sensor histidine kinase Regulator
  EL095_RS04835 (SAMEA3500277_00991) vraR 1074890..1075519 (+) 630 WP_002481662.1 response regulator transcription factor Regulator
  EL095_RS04840 (SAMEA3500277_00992) - 1075590..1076168 (-) 579 WP_002481661.1 carbonic anhydrase -
  EL095_RS04845 (SAMEA3500277_00993) - 1076376..1077452 (-) 1077 WP_002481660.1 YihY/virulence factor BrkB family protein -
  EL095_RS04850 (SAMEA3500277_00994) - 1077583..1077873 (-) 291 WP_002481659.1 hypothetical protein -
  EL095_RS04855 (SAMEA3500277_00995) - 1077881..1078345 (-) 465 WP_023015860.1 low molecular weight protein-tyrosine-phosphatase -
  EL095_RS04860 (SAMEA3500277_00996) - 1078569..1078775 (+) 207 WP_002481657.1 DUF1128 family protein -

Sequence


Protein


Download         Length: 347 a.a.        Molecular weight: 39897.15 Da        Isoelectric Point: 4.8944

>NTDB_id=1119463 EL095_RS04830 WP_002481663.1 1073857..1074900(+) (vraS) [Staphylococcus simulans strain NCTC7944]
MNHYIRAIGSMLILNYSILAIFFFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNIIVILMSIIVGSVLAYKVNEQNDWIKT
QIEHSIEGEVVGINDQNIELYQETLDIYHTLVPLNQELHRLRIKTQDLTNETYNLNDVKVKKIIEDERQRLARELHDSVS
QQLFAASMMLSAIKESPLEPPLDQQIPTLEKMVQDSQLEMRALLLHLRPLGLKDRSLGEGIKDLVVDLQKKVPMKVVYDI
EDFEVPKGIEDHLFRITQEGISNTLRHAEGTKLTIDLFNKDDYLLLRIQDDGKGFDVDEKMEKSYGLKNMRERALEIGAT
LHIVSLPGAGTRIEVKAPLNKEENDGD

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1119463 EL095_RS04830 WP_002481663.1 1073857..1074900(+) (vraS) [Staphylococcus simulans strain NCTC7944]
ATGAACCACTATATCAGAGCCATCGGTTCGATGCTGATATTGAACTATAGTATTTTAGCGATTTTCTTTTTTATAGACAA
AGTATTCGTCAACATCATCTACTTTCAAGGAATGTTTTACACGCAGATTTTCGGCATTCCTGTTTTCTTATTTTTAAATA
TTATAGTGATTTTGATGAGTATTATTGTTGGTTCTGTGTTAGCGTATAAAGTGAACGAACAAAATGATTGGATTAAAACA
CAAATTGAACATTCCATTGAAGGGGAAGTTGTCGGTATTAATGATCAAAATATCGAACTCTACCAAGAAACTTTGGATAT
CTATCATACACTTGTGCCATTAAACCAAGAATTACATCGACTACGTATTAAAACACAAGATTTGACCAACGAAACATATA
ATTTAAATGACGTTAAAGTGAAGAAAATTATAGAAGATGAACGCCAGCGTTTAGCTAGGGAATTGCATGATTCAGTTAGT
CAGCAATTATTTGCGGCAAGTATGATGTTATCGGCGATTAAGGAATCACCACTTGAACCGCCACTTGATCAGCAAATTCC
AACACTAGAAAAGATGGTCCAAGATTCGCAACTAGAAATGCGTGCATTGTTATTACATTTAAGACCGCTTGGCTTAAAAG
ATCGCTCACTTGGGGAAGGAATTAAAGATCTTGTTGTGGACTTACAAAAGAAAGTGCCTATGAAAGTAGTTTATGATATT
GAAGACTTTGAGGTACCAAAAGGCATAGAAGATCATTTATTCCGTATCACCCAAGAAGGGATTTCCAATACACTGCGACA
TGCAGAAGGCACAAAATTAACGATAGATTTATTTAATAAAGATGATTATCTGTTATTGCGTATTCAAGATGATGGTAAAG
GCTTTGATGTAGATGAAAAAATGGAGAAAAGCTATGGATTGAAGAATATGCGAGAGCGAGCATTAGAAATCGGGGCAACA
CTGCATATTGTTTCTTTGCCTGGGGCAGGGACAAGAATTGAAGTGAAGGCTCCATTGAATAAGGAGGAAAATGATGGCGA
TTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

86.167

100

0.862


Multiple sequence alignment