Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   EL075_RS04130 Genome accession   NZ_LR134244
Coordinates   857190..857906 (-) Length   238 a.a.
NCBI ID   WP_126403132.1    Uniprot ID   -
Organism   Staphylococcus warneri strain NCTC7291     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 852190..862906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL075_RS04110 (NCTC7291_00851) - 853078..853302 (+) 225 WP_002466256.1 sulfurtransferase TusA family protein -
  EL075_RS04115 (NCTC7291_00852) - 853443..854393 (+) 951 WP_002466257.1 LacI family DNA-binding transcriptional regulator -
  EL075_RS04120 (NCTC7291_00853) - 854694..856178 (+) 1485 WP_126403131.1 sucrose-6-phosphate hydrolase -
  EL075_RS04125 (NCTC7291_00854) - 856175..857131 (+) 957 WP_002466260.1 carbohydrate kinase family protein -
  EL075_RS04130 (NCTC7291_00855) agrA 857190..857906 (-) 717 WP_126403132.1 quorum-sensing response regulator AgrA Regulator
  EL075_RS04135 (NCTC7291_00856) agrC 857919..859208 (-) 1290 WP_002466247.1 quorum-sensing sensor histidine kinase AgrC -
  EL075_RS04140 (NCTC7291_00857) agrD 859238..859378 (-) 141 WP_002466272.1 cyclic lactone autoinducer peptide AgrD -
  EL075_RS04145 (NCTC7291_00858) - 859383..859946 (-) 564 WP_002466262.1 accessory gene regulator AgrB -
  EL075_RS04150 - 860263..860340 (+) 78 WP_015364840.1 delta-lysin family phenol-soluble modulin -
  EL075_RS04155 - 860407..860484 (+) 78 WP_015364841.1 delta-lysin family phenol-soluble modulin -
  EL075_RS04160 (NCTC7291_00861) - 860898..861683 (-) 786 WP_002466274.1 carbon-nitrogen family hydrolase -
  EL075_RS04165 (NCTC7291_00862) - 861800..862426 (-) 627 WP_002466261.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27871.84 Da        Isoelectric Point: 5.9175

>NTDB_id=1119359 EL075_RS04130 WP_126403132.1 857190..857906(-) (agrA) [Staphylococcus warneri strain NCTC7291]
MKIFICEDDPKQRENMASIIKNYIMIEEKPMELALATDDPYEVLEQSKNMNDIGCYFLDIQLEADINGSKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELKTRIIDCLETAHTRLKLLSKESNVETIELKRGSNSVYVQYDDIM
FFESSSKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVINRRNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1119359 EL075_RS04130 WP_126403132.1 857190..857906(-) (agrA) [Staphylococcus warneri strain NCTC7291]
ATGAAAATATTCATTTGCGAAGATGATCCAAAACAACGAGAAAATATGGCTTCAATTATTAAAAATTATATTATGATTGA
GGAAAAGCCTATGGAGCTTGCTCTCGCAACTGATGATCCTTATGAAGTGCTTGAGCAATCCAAAAATATGAATGACATCG
GTTGTTATTTCTTAGATATTCAACTTGAAGCTGATATAAATGGTAGTAAATTAGGTAGTGAAATTCGAAAACATGATCCT
GTAGGTAATATCATTTTTGTAACAAGTCATAGTGAATTAACGTATCTCACTTTCGTTTATAAAGTGGCTGCAATGGATTT
TATATTCAAAGATGATCCTGCAGAACTGAAAACACGTATTATCGATTGTTTAGAAACAGCTCACACAAGACTTAAATTAT
TATCTAAAGAAAGTAATGTAGAAACAATAGAGTTAAAGCGTGGTAGTAATTCAGTTTATGTACAATATGACGATATTATG
TTTTTCGAATCATCTAGTAAATCACATCGTTTAATTGCACATTTAGATAATAGACAAATCGAATTTTATGGTAACCTTAA
AGAATTAAGTCAATTAGATGACCGTTTCTTTAGATGTCATAATAGCTTTGTGATTAACCGAAGAAATATTGAGTCAATTG
ATTCTAAAGAACGCATTGTCTATTTTAAAAATAAAGAGCATTGTTATGCATCAGTTCGTAATGTCAAAAAGATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

93.277

100

0.933

Multiple sequence alignment