Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EL131_RS00730 Genome accession   NZ_LR134234
Coordinates   157563..158192 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain NCTC8623     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 152563..163192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL131_RS00710 (NCTC8623_00146) ycbZ 152964..154724 (-) 1761 WP_000156526.1 Lon protease family protein -
  EL131_RS00715 (NCTC8623_00147) matP 154910..155362 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EL131_RS00720 (NCTC8623_00148) ompA 155438..156478 (-) 1041 WP_000750416.1 porin OmpA -
  EL131_RS00725 (NCTC8623_00149) sulA 156835..157344 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  EL131_RS00730 (NCTC8623_00150) sxy/tfoX 157563..158192 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EL131_RS00735 (NCTC8623_00151) yccS 158155..160317 (-) 2163 WP_000875015.1 YccS family putative transporter -
  EL131_RS00740 (NCTC8623_00152) yccF 160327..160773 (-) 447 WP_001261235.1 YccF domain-containing protein -
  EL131_RS00745 (NCTC8623_00153) helD 160896..162950 (+) 2055 WP_001352492.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1119228 EL131_RS00730 WP_000839153.1 157563..158192(+) (sxy/tfoX) [Escherichia coli strain NCTC8623]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1119228 EL131_RS00730 WP_000839153.1 157563..158192(+) (sxy/tfoX) [Escherichia coli strain NCTC8623]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment