Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EL118_RS15165 Genome accession   NZ_LR134228
Coordinates   3079494..3080123 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain NCTC9699     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3074494..3085123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL118_RS15150 (NCTC9699_03024) helD 3074736..3076790 (-) 2055 WP_000420536.1 DNA helicase IV -
  EL118_RS15155 (NCTC9699_03025) yccF 3076913..3077359 (+) 447 WP_001261235.1 YccF domain-containing protein -
  EL118_RS15160 (NCTC9699_03026) yccS 3077369..3079531 (+) 2163 WP_000875045.1 YccS family putative transporter -
  EL118_RS15165 (NCTC9699_03027) sxy/tfoX 3079494..3080123 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EL118_RS15170 (NCTC9699_03028) sulA 3080342..3080851 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  EL118_RS15175 (NCTC9699_03029) ompA 3081208..3082260 (+) 1053 WP_001307702.1 porin OmpA -
  EL118_RS15180 (NCTC9699_03030) matP 3082336..3082788 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EL118_RS15185 (NCTC9699_03031) ycbZ 3082974..3084734 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1119198 EL118_RS15165 WP_000839153.1 3079494..3080123(-) (sxy/tfoX) [Escherichia coli strain NCTC9699]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1119198 EL118_RS15165 WP_000839153.1 3079494..3080123(-) (sxy/tfoX) [Escherichia coli strain NCTC9699]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGCGCCATTATCGGGATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTAGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment