Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EL088_RS14335 Genome accession   NZ_LR134220
Coordinates   2917477..2918106 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain NCTC11121     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2912477..2923106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL088_RS14320 (NCTC11121_02893) helD 2912719..2914773 (-) 2055 WP_000420536.1 DNA helicase IV -
  EL088_RS14325 (NCTC11121_02894) yccF 2914896..2915342 (+) 447 WP_001261235.1 YccF domain-containing protein -
  EL088_RS14330 (NCTC11121_02895) yccS 2915352..2917514 (+) 2163 WP_000875061.1 YccS family putative transporter -
  EL088_RS14335 (NCTC11121_02896) sxy/tfoX 2917477..2918106 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EL088_RS14340 (NCTC11121_02897) sulA 2918325..2918834 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  EL088_RS14345 (NCTC11121_02898) ompA 2919191..2920231 (+) 1041 WP_000750416.1 porin OmpA -
  EL088_RS14350 (NCTC11121_02899) matP 2920307..2920759 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EL088_RS14355 (NCTC11121_02900) ycbZ 2920945..2922705 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1119134 EL088_RS14335 WP_000839153.1 2917477..2918106(-) (sxy/tfoX) [Escherichia coli strain NCTC11121]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1119134 EL088_RS14335 WP_000839153.1 2917477..2918106(-) (sxy/tfoX) [Escherichia coli strain NCTC11121]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment