Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   EL020_RS08810 Genome accession   NZ_LR134203
Coordinates   1736514..1737239 (-) Length   241 a.a.
NCBI ID   WP_126402652.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain NCTC11436     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1731514..1742239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL020_RS08785 (NCTC11436_01876) - 1732569..1733600 (-) 1032 WP_126402651.1 sensor domain-containing diguanylate cyclase -
  EL020_RS08795 (NCTC11436_01877) trmB 1733965..1734603 (-) 639 WP_020916253.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  EL020_RS08800 (NCTC11436_01878) ccrZ 1734603..1735370 (-) 768 WP_288573826.1 cell cycle regulator CcrZ -
  EL020_RS08805 (NCTC11436_01879) - 1735477..1736511 (-) 1035 WP_020916251.1 ABC transporter permease -
  EL020_RS08810 (NCTC11436_01880) pptA 1736514..1737239 (-) 726 WP_126402652.1 ABC transporter ATP-binding protein Regulator
  EL020_RS08815 (NCTC11436_01881) - 1737303..1737722 (+) 420 WP_126402653.1 HIT family protein -
  EL020_RS08820 (NCTC11436_01882) - 1737719..1738024 (+) 306 WP_058813651.1 hypothetical protein -
  EL020_RS08825 (NCTC11436_01883) brpA 1738109..1739269 (-) 1161 WP_020916247.1 biofilm formation/cell division transcriptional regulator BrpA -
  EL020_RS08830 (NCTC11436_01884) - 1739280..1739792 (-) 513 WP_020916246.1 GNAT family N-acetyltransferase -
  EL020_RS08835 (NCTC11436_01885) tsaE 1739785..1740228 (-) 444 WP_020916245.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  EL020_RS08840 (NCTC11436_01886) - 1740404..1741825 (-) 1422 WP_126402654.1 NCS2 family permease -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26770.15 Da        Isoelectric Point: 4.6835

>NTDB_id=1118985 EL020_RS08810 WP_126402652.1 1736514..1737239(-) (pptA) [Streptococcus lutetiensis strain NCTC11436]
MLKIENVTGGYINIPVLKNISFEVGDGELVGLIGLNGAGKSTTINEVIGLLTPYQGKITLDGLTLADNQAEYRKKIGFIP
ETPSLYEELTLREHLETVAMAYDLDFDQAMARAKELLKLFRLSDKLEWFPINFSKGMKQKVMIVCAFMIDPYLFIVDEPF
LGLDPLAISDLTDLLAQEKAKGKAILMSTHVLDAAEKMCDRFVILHHGQVRAMGNLAELRQAFGQEDASLNDIYIALTKE
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1118985 EL020_RS08810 WP_126402652.1 1736514..1737239(-) (pptA) [Streptococcus lutetiensis strain NCTC11436]
ATGTTAAAAATTGAAAATGTCACAGGTGGATACATTAATATCCCTGTTTTAAAAAATATTTCTTTTGAAGTTGGTGACGG
TGAGTTGGTCGGCTTGATTGGGCTAAATGGTGCTGGGAAGTCAACGACGATTAATGAAGTTATCGGACTTTTGACGCCTT
ATCAAGGAAAGATTACGCTTGACGGCTTGACTTTGGCTGATAACCAAGCAGAGTATCGCAAAAAGATTGGCTTTATTCCT
GAAACGCCAAGCTTGTATGAAGAGTTAACTTTACGTGAGCATTTAGAGACGGTTGCTATGGCTTATGACCTTGATTTTGA
TCAAGCGATGGCGCGTGCTAAGGAATTGCTAAAACTTTTCCGTCTGTCTGATAAGCTTGAATGGTTCCCGATTAATTTTT
CAAAAGGGATGAAGCAAAAGGTTATGATTGTGTGCGCCTTTATGATTGATCCTTATTTGTTTATCGTTGATGAGCCATTT
TTGGGACTAGATCCTTTGGCGATTTCTGATTTAACGGATTTGCTAGCGCAGGAAAAAGCAAAAGGCAAAGCTATTTTGAT
GTCAACACACGTGTTAGATGCTGCTGAAAAAATGTGTGATCGATTTGTGATTTTGCATCATGGTCAAGTGCGTGCAATGG
GAAATCTAGCTGAATTGCGTCAAGCTTTTGGTCAAGAAGATGCTAGTTTGAACGATATTTACATAGCTTTAACTAAAGAG
GGATAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

77.406

99.17

0.768
  pptA Streptococcus thermophilus LMD-9

76.151

99.17

0.755

Multiple sequence alignment