Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EL020_RS04220 Genome accession   NZ_LR134203
Coordinates   798948..800750 (+) Length   600 a.a.
NCBI ID   WP_126402420.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain NCTC11436     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 793948..805750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL020_RS04195 (NCTC11436_00873) queA 794609..795637 (-) 1029 WP_020916428.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  EL020_RS04200 (NCTC11436_00874) - 795801..796307 (+) 507 WP_058833169.1 VIT1/CCC1 transporter family protein -
  EL020_RS04205 (NCTC11436_00875) nagB 796439..797146 (+) 708 WP_111712678.1 glucosamine-6-phosphate deaminase -
  EL020_RS04210 (NCTC11436_00876) - 797220..797936 (+) 717 WP_126402419.1 pseudouridine synthase -
  EL020_RS04215 (NCTC11436_00877) coiA 797986..798948 (+) 963 WP_020916432.1 competence protein CoiA Machinery gene
  EL020_RS04220 (NCTC11436_00878) pepF 798948..800750 (+) 1803 WP_126402420.1 oligoendopeptidase F Regulator
  EL020_RS04225 (NCTC11436_00879) - 800819..801316 (+) 498 WP_020916434.1 GNAT family N-acetyltransferase -
  EL020_RS04230 (NCTC11436_00880) - 801336..801947 (+) 612 WP_020916435.1 HAD-IA family hydrolase -
  EL020_RS04235 (NCTC11436_00881) - 801995..802696 (+) 702 WP_020916436.1 O-methyltransferase -
  EL020_RS04240 (NCTC11436_00882) - 802766..803827 (+) 1062 WP_020916437.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69058.14 Da        Isoelectric Point: 4.7843

>NTDB_id=1118964 EL020_RS04220 WP_126402420.1 798948..800750(+) (pepF) [Streptococcus lutetiensis strain NCTC11436]
MSDNRSHIDEKYKWDLSTVFATDDAWEAELAKLDAGLEDAKKYKGHLTQSSKNLLTMTEHYLDLSRRLEKVYVYASMKSD
QDTTVAKYQEYQAKATALYAKYSEVFAFYEPELMKLSAEDFAAFVAETPALSAYTHFFEQLFKRQAHVLSQKEEELLAGA
HEIFGAAGETFEILDNADIVFPEVLDDEGNEVQLTHGNFISLLESKNRDVRKAAYEAMYATYEQFQHTYAKTLQTNVKVH
NYDARVHHFKSAREAALSANFIPEAVYDTLIDRVNAHLSLLHRYVALRKKVLKLDDLKMYDIHTPLSEMDMSFTYEEALK
KAEEVLAIFGKDYSERVHRAFTERWIDVHVNKGKRSGAYSGGAYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTETLLKEVDDDKARFAILNHFLDGFKGTIFRQAQFAEFEDMIHKADQAGEVLTSEY
LNNLYADLNEKYYGLSKEDNPEIQYEWARIPHFYYNYYVYQYATGFAAASYLADKVVHGTQVDIDRYLDYLKAGNSDYPL
NVIEKAGVDMTSSDYLDAAFKIFEDRLNELEALVEKGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1118964 EL020_RS04220 WP_126402420.1 798948..800750(+) (pepF) [Streptococcus lutetiensis strain NCTC11436]
ATGTCAGATAATCGTAGTCATATCGATGAAAAATATAAATGGGATCTAAGCACTGTTTTTGCGACTGATGACGCTTGGGA
GGCTGAATTAGCTAAGTTAGATGCTGGTTTAGAAGATGCTAAAAAATACAAAGGTCACTTGACGCAATCAAGTAAGAATT
TGCTAACTATGACGGAGCATTATCTTGATTTGTCACGCAGATTGGAAAAAGTTTACGTCTATGCATCAATGAAAAGTGAC
CAAGATACAACAGTGGCAAAATACCAAGAATACCAAGCTAAAGCCACAGCACTTTATGCTAAATACAGTGAAGTCTTTGC
TTTTTACGAACCAGAATTGATGAAATTATCAGCTGAAGATTTTGCGGCATTTGTTGCTGAGACGCCAGCACTATCAGCTT
ATACGCATTTCTTTGAACAACTTTTCAAACGCCAAGCACATGTCTTGTCACAAAAAGAAGAAGAACTCTTAGCTGGTGCA
CACGAAATTTTTGGTGCTGCTGGTGAAACTTTTGAAATTCTGGATAATGCTGATATTGTTTTCCCAGAGGTTTTAGATGA
TGAAGGCAATGAGGTACAATTAACACATGGTAATTTCATTAGTCTTTTGGAATCAAAAAATCGCGACGTCCGAAAAGCAG
CTTATGAAGCGATGTATGCCACTTATGAACAATTCCAACACACTTACGCTAAGACATTACAGACAAATGTTAAGGTTCAT
AACTATGATGCGCGTGTTCACCACTTCAAGTCAGCACGTGAGGCAGCACTTTCTGCTAACTTCATTCCAGAAGCAGTTTA
TGATACATTGATTGACCGTGTGAATGCACACTTGTCACTGCTTCATCGTTATGTGGCACTTCGTAAGAAAGTTCTTAAAT
TGGACGATTTGAAAATGTATGATATTCATACACCATTGTCTGAAATGGATATGAGTTTTACTTATGAAGAAGCTTTGAAA
AAAGCAGAAGAAGTTTTGGCTATCTTCGGTAAAGATTATTCTGAACGTGTTCACCGTGCTTTCACAGAACGTTGGATTGA
CGTTCATGTCAATAAAGGAAAACGCTCAGGAGCTTATTCTGGTGGGGCTTACGATACCAACGCCTTTATGCTTTTGAACT
GGCAAGATACGCTTGATAATCTGTTTACTTTGGTACATGAAACTGGGCACAGCCTTCATTCAACATTTACTCGTGAAAAT
CAACCGTATGTCTACGGTGATTACAGCATTTTCTTAGCTGAAATTGCTTCAACAACCAATGAAAATATTTTAACGGAAAC
GCTTTTGAAAGAAGTTGACGATGATAAAGCTCGCTTTGCGATTTTGAATCATTTCTTGGATGGTTTTAAAGGAACAATCT
TCCGTCAAGCACAATTTGCAGAGTTTGAAGATATGATTCATAAAGCAGACCAAGCTGGTGAAGTATTGACAAGCGAATAC
CTTAACAATCTTTATGCAGACCTAAATGAAAAATATTATGGTCTTAGCAAGGAAGACAATCCGGAAATTCAATACGAATG
GGCACGTATTCCGCATTTCTACTACAACTATTATGTTTATCAATACGCAACAGGTTTTGCAGCAGCAAGCTACCTAGCTG
ATAAAGTGGTTCACGGTACACAAGTTGATATCGACCGTTACCTTGATTACCTCAAGGCTGGTAATTCTGATTACCCACTT
AATGTGATTGAAAAAGCTGGAGTTGATATGACAAGTAGTGATTATCTGGATGCTGCCTTCAAGATTTTTGAAGACCGCCT
AAATGAACTAGAAGCCTTGGTTGAAAAAGGGGCACACCTTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71.833

100

0.718

Multiple sequence alignment