Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EL098_RS19130 Genome accession   NZ_LR134201
Coordinates   3938662..3940044 (-) Length   460 a.a.
NCBI ID   WP_126357630.1    Uniprot ID   A0A3S4IKJ3
Organism   Cedecea lapagei strain NCTC11466     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3933662..3945044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL098_RS19120 (NCTC11466_03922) ettA 3934974..3936641 (+) 1668 WP_008460109.1 energy-dependent translational throttle protein EttA -
  EL098_RS19125 (NCTC11466_03923) nadR 3937383..3938615 (-) 1233 WP_126357629.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  EL098_RS19130 (NCTC11466_03924) radA 3938662..3940044 (-) 1383 WP_126357630.1 DNA repair protein RadA Machinery gene
  EL098_RS19135 (NCTC11466_03925) serB 3940059..3941036 (-) 978 WP_126357631.1 phosphoserine phosphatase -
  EL098_RS19140 (NCTC11466_03926) - 3941186..3941821 (+) 636 WP_126357632.1 YtjB family periplasmic protein -
  EL098_RS19145 (NCTC11466_03927) lplA 3941895..3942911 (+) 1017 WP_126357633.1 lipoate--protein ligase LplA -
  EL098_RS19150 (NCTC11466_03928) yjjJ 3942908..3944236 (-) 1329 WP_126357634.1 type II toxin-antitoxin system HipA family toxin YjjJ -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49623.33 Da        Isoelectric Point: 7.6504

>NTDB_id=1118926 EL098_RS19130 WP_126357630.1 3938662..3940044(-) (radA) [Cedecea lapagei strain NCTC11466]
MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPQVARNERLSGYAGSAGVNRVQKLSEISLEELPRFSTG
FKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSEQMKTLYVTGEESLQQVAMRAHRLGLPTQNLNMLSETSIE
QICMIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTKGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VMLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTPGSSVMVVWEGTRPLLVEIQALVDQ
SMMSNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRALPQDLVVFGEV
GLAGEIRPVPSGQERISEAAKHGFKRAIVPQANVPKKIPKGMQVFGVKKLADALSVFDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=1118926 EL098_RS19130 WP_126357630.1 3938662..3940044(-) (radA) [Cedecea lapagei strain NCTC11466]
GTGGCGAAAGCTCCAAAACGCGCATTTGTTTGTAACGAGTGTGGTGCGGATTACCCGCGCTGGCAGGGGCAGTGCAGCGC
CTGTCACGCGTGGAATACCATTACCGAAGTGCGCATCGCCGCTTCTCCTCAGGTTGCCCGCAACGAGCGTCTGTCCGGCT
ATGCCGGGAGCGCGGGCGTCAACCGGGTGCAAAAGCTCTCGGAGATCAGCCTTGAAGAGCTGCCGCGTTTTTCCACCGGT
TTTAAAGAGTTTGACCGCGTGTTGGGCGGCGGCGTGGTGCCGGGCAGCGCTATCCTGATTGGCGGCAACCCCGGCGCGGG
GAAATCGACGCTGCTGCTGCAGACGCTTTGCAAACTCAGCGAGCAGATGAAAACCCTGTACGTCACCGGCGAAGAGTCGC
TTCAGCAGGTGGCGATGCGAGCGCACCGTCTGGGCCTGCCGACGCAAAATCTCAACATGCTGTCGGAAACCAGCATCGAG
CAGATCTGTATGATCGCAGAGGAAGAGCAGCCGAAGCTGATGGTGATCGACTCGATCCAGGTCATGCATATGGCGGACGT
GCAGTCTTCGCCCGGCAGCGTGGCCCAGGTCCGAGAAACTGCGGCCTATCTGACGCGCTTTGCGAAGACCAAAGGCGTGG
CGATCGTAATGGTCGGCCACGTGACCAAAGACGGCTCCCTGGCGGGGCCAAAAGTCCTTGAGCACTGCATTGACTGTTCC
GTAATGCTCGACGGCGATGCTGATTCTCGTTTTCGCACCCTGCGCAGCCATAAAAACCGTTTTGGCGCGGTGAACGAGCT
TGGCGTATTCGCGATGACCGAGCAGGGGCTGCGTGAAGTCAGTAACCCTTCTGCTATCTTCCTGAGCCGCGGTGATGAAG
TGACGCCGGGCAGCTCGGTAATGGTAGTCTGGGAAGGGACTCGCCCGCTGCTGGTAGAGATTCAGGCGCTGGTGGATCAG
TCCATGATGTCCAACCCTCGCCGCGTGGCCGTTGGCCTGGAGCAAAACCGTCTGGCGATTTTGCTGGCCGTACTGCACCG
CCACGGCGGCCTGCAAATGGCCGACCAGGATGTCTTCGTGAACGTGGTGGGTGGCGTAAAAGTCACCGAAACCAGCGCCG
ACCTTGCGCTGCTGCTGGCGATGGTTTCCAGCCTGCGCGACAGGGCTTTGCCTCAGGATTTGGTGGTGTTTGGTGAAGTC
GGGCTGGCCGGTGAAATCCGTCCGGTGCCCAGCGGCCAGGAACGCATTTCCGAGGCGGCAAAACACGGTTTTAAGCGTGC
GATTGTGCCGCAGGCCAACGTACCGAAAAAAATTCCTAAAGGGATGCAGGTCTTCGGCGTGAAAAAACTTGCTGATGCGC
TTTCTGTATTCGACGACTTATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S4IKJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.261

100

0.483
  radA Streptococcus pneumoniae Rx1

44.079

99.13

0.437
  radA Streptococcus pneumoniae D39

44.079

99.13

0.437
  radA Streptococcus pneumoniae R6

44.079

99.13

0.437
  radA Streptococcus pneumoniae TIGR4

44.079

99.13

0.437
  radA Streptococcus mitis NCTC 12261

44.079

99.13

0.437
  radA Streptococcus mitis SK321

43.86

99.13

0.435

Multiple sequence alignment