Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EL098_RS14630 Genome accession   NZ_LR134201
Coordinates   3004940..3005569 (-) Length   209 a.a.
NCBI ID   WP_126356916.1    Uniprot ID   A0A447V4E2
Organism   Cedecea lapagei strain NCTC11466     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2999940..3010569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL098_RS14615 (NCTC11466_02980) helD 3000174..3002228 (-) 2055 WP_126356914.1 DNA helicase IV -
  EL098_RS14620 (NCTC11466_02981) - 3002358..3002804 (+) 447 WP_126356915.1 YccF domain-containing protein -
  EL098_RS14625 (NCTC11466_02982) yccS 3002817..3004955 (+) 2139 WP_126358463.1 YccS family putative transporter -
  EL098_RS14630 (NCTC11466_02983) sxy/tfoX 3004940..3005569 (-) 630 WP_126356916.1 TfoX/Sxy family DNA transformation protein Regulator
  EL098_RS14635 (NCTC11466_02984) sulA 3005787..3006296 (+) 510 WP_126356917.1 SOS-induced cell division inhibitor SulA -
  EL098_RS14640 (NCTC11466_02985) ompA 3006654..3007730 (+) 1077 WP_126356918.1 porin OmpA -
  EL098_RS14645 (NCTC11466_02986) matP 3007822..3008274 (-) 453 WP_126356919.1 macrodomain Ter protein MatP -
  EL098_RS14650 (NCTC11466_02987) - 3008451..3010205 (+) 1755 WP_126356920.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24270.00 Da        Isoelectric Point: 10.2736

>NTDB_id=1118922 EL098_RS14630 WP_126356916.1 3004940..3005569(-) (sxy/tfoX) [Cedecea lapagei strain NCTC11466]
MKDVTFRRIHKSQKYLSSLGKIGCRPLFGGYSLTVDGIVFAMVAEGELYLRACEQCADYFAQKSAQPLRYNKRGLPVALN
YYRVDEELWQDPDKLIQLSSLALRSARREKNQSMGRSRRLKDLPNLSLNIEVMLRDVGIGDPQTLQLFGARRSWLKLRNT
RRSVGIKVLLALEGAIHGVHEAVLPADVRNELTEWWRRYEQRQHLYREH

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1118922 EL098_RS14630 WP_126356916.1 3004940..3005569(-) (sxy/tfoX) [Cedecea lapagei strain NCTC11466]
ATGAAAGACGTTACGTTTCGTAGAATCCATAAATCACAGAAATATCTTTCCTCGCTGGGTAAAATCGGCTGTCGCCCGCT
CTTCGGCGGTTACAGCCTGACGGTCGACGGCATCGTTTTTGCGATGGTCGCGGAAGGGGAGCTCTATTTGCGTGCCTGTG
AACAGTGTGCGGATTATTTCGCCCAAAAATCTGCGCAGCCTCTCAGGTATAACAAACGCGGGCTGCCGGTAGCGCTGAAT
TATTACCGGGTTGATGAGGAGCTCTGGCAAGATCCCGACAAACTCATCCAGCTCTCTTCGCTGGCGTTGAGAAGCGCCCG
GCGCGAGAAAAATCAGAGCATGGGGCGTTCACGCCGGCTTAAAGATCTTCCCAACCTTTCCCTGAATATTGAGGTCATGC
TGCGTGATGTGGGGATCGGCGATCCCCAAACGCTGCAGCTCTTTGGCGCCAGGCGATCCTGGTTGAAACTGAGAAACACC
AGGCGAAGCGTCGGCATTAAGGTGCTGCTGGCCCTTGAAGGGGCCATACATGGGGTACATGAAGCCGTGTTACCCGCGGA
CGTTCGTAACGAGCTGACTGAGTGGTGGCGCCGCTATGAACAGCGCCAACATCTTTACCGGGAGCACTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-195)

TfoX N-terminal domain (TfoX_N)

(15-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A447V4E2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.821

93.301

0.493

Multiple sequence alignment