Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EL110_RS16240 Genome accession   NZ_LR134196
Coordinates   3264206..3264802 (-) Length   198 a.a.
NCBI ID   WP_062914558.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain NCTC11357     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3259206..3269802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL110_RS16225 (NCTC11357_03149) helD 3259417..3261471 (-) 2055 WP_004201438.1 DNA helicase IV -
  EL110_RS16230 (NCTC11357_03150) - 3261596..3262042 (+) 447 WP_004201437.1 YccF domain-containing protein -
  EL110_RS16235 (NCTC11357_03151) yccS 3262060..3264195 (+) 2136 WP_004201435.1 YccS family putative transporter -
  EL110_RS16240 (NCTC11357_03152) sxy/tfoX 3264206..3264802 (-) 597 WP_062914558.1 TfoX/Sxy family DNA transformation protein Regulator
  EL110_RS25560 - 3264820..3265125 (-) 306 WP_153351982.1 hypothetical protein -
  EL110_RS16250 (NCTC11357_03153) sulA 3265151..3265660 (+) 510 WP_017899460.1 SOS-induced cell division inhibitor SulA -
  EL110_RS16255 (NCTC11357_03154) ompA 3266013..3267083 (+) 1071 WP_004201430.1 porin OmpA -
  EL110_RS16260 (NCTC11357_03155) matP 3267266..3267718 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  EL110_RS16265 (NCTC11357_03156) - 3267904..3269661 (+) 1758 WP_126494516.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22594.35 Da        Isoelectric Point: 10.2926

>NTDB_id=1118901 EL110_RS16240 WP_062914558.1 3264206..3264802(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain NCTC11357]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARRAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1118901 EL110_RS16240 WP_062914558.1 3264206..3264802(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain NCTC11357]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACATGGGCGCATCGTGCCGCTAAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGGACGCCTGAAAGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGATGTGTTAGCACTACGGGAGGTGGGCGCCCGCCGGGCCTGGCTAAAGCTGCGTGAGAACAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTCCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5

Multiple sequence alignment