Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   EL036_RS10830 Genome accession   NZ_LR134193
Coordinates   2108671..2109387 (+) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   A0A7U7IEW1
Organism   Staphylococcus aureus strain NCTC13616     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2103671..2114387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL036_RS10800 (NCTC13616_02073) - 2103979..2104605 (+) 627 WP_000522384.1 nitroreductase family protein -
  EL036_RS10805 (NCTC13616_02074) - 2104875..2105660 (+) 786 WP_000867943.1 carbon-nitrogen family hydrolase -
  EL036_RS14870 hld 2106259..2106339 (-) 81 WP_000046022.1 delta-hemolysin -
  EL036_RS10815 (NCTC13616_02076) agrB 2106629..2107198 (+) 570 WP_001105713.1 accessory gene regulator AgrB -
  EL036_RS10820 (NCTC13616_02077) agrD 2107195..2107335 (+) 141 WP_001093929.1 cyclic lactone autoinducer peptide AgrD -
  EL036_RS10825 (NCTC13616_02078) agrC 2107360..2108652 (+) 1293 WP_001670396.1 quorum-sensing sensor histidine kinase AgrC -
  EL036_RS10830 (NCTC13616_02079) agrA 2108671..2109387 (+) 717 WP_000688492.1 quorum-sensing response regulator AgrA Regulator
  EL036_RS10835 - 2109459..2109566 (+) 108 WP_031789494.1 hypothetical protein -
  EL036_RS10840 (NCTC13616_02080) - 2109755..2110714 (-) 960 WP_001253301.1 carbohydrate kinase family protein -
  EL036_RS10845 (NCTC13616_02081) - 2110711..2112195 (-) 1485 WP_000141410.1 sucrose-6-phosphate hydrolase -
  EL036_RS10850 (NCTC13616_02082) - 2112344..2113294 (-) 951 WP_000790322.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=1118860 EL036_RS10830 WP_000688492.1 2108671..2109387(+) (agrA) [Staphylococcus aureus strain NCTC13616]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1118860 EL036_RS10830 WP_000688492.1 2108671..2109387(+) (agrA) [Staphylococcus aureus strain NCTC13616]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATCCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCATAGTGAACTTACGTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACACGTATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATCGAATCTATAG
ATTCGAAAGAGCGCATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IEW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1

Multiple sequence alignment